Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1198

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1195 and GFF1196 are separated by 56 nucleotidesGFF1196 and GFF1197 are separated by 48 nucleotidesGFF1197 and GFF1198 are separated by 96 nucleotidesGFF1198 and GFF1199 are separated by 93 nucleotidesGFF1199 and GFF1200 are separated by 53 nucleotidesGFF1200 and GFF1201 are separated by 89 nucleotides GFF1195 - hypothetical protein, at 43,594 to 43,716 GFF1195 GFF1196 - hypothetical protein, at 43,773 to 43,904 GFF1196 GFF1197 - Outer membrane protein assembly factor YaeT precursor, at 43,953 to 44,093 GFF1197 GFF1198 - Porin thermoregulatory protein envY, at 44,190 to 44,948 GFF1198 GFF1199 - hypothetical protein, at 45,042 to 45,161 GFF1199 GFF1200 - Attachment invasion locus protein precursor, at 45,215 to 45,772 GFF1200 GFF1201 - Outer membrane protein assembly factor YaeT precursor, at 45,862 to 46,707 GFF1201 Position (kb) 44 45Strain fitness (log2 ratio) -1 0 1at 43.334 kb on + strandat 43.428 kb on + strandat 43.428 kb on + strandat 43.428 kb on + strandat 43.428 kb on + strandat 43.429 kb on - strandat 43.432 kb on - strandat 43.661 kb on + strand, within GFF1195at 43.661 kb on + strand, within GFF1195at 43.662 kb on - strand, within GFF1195at 43.662 kb on - strand, within GFF1195at 43.787 kb on + strand, within GFF1196at 43.787 kb on + strand, within GFF1196at 43.787 kb on + strand, within GFF1196at 43.788 kb on - strand, within GFF1196at 43.788 kb on - strand, within GFF1196at 43.788 kb on - strand, within GFF1196at 43.817 kb on - strand, within GFF1196at 43.817 kb on - strand, within GFF1196at 43.817 kb on - strand, within GFF1196at 43.842 kb on - strand, within GFF1196at 43.853 kb on - strand, within GFF1196at 43.887 kb on + strand, within GFF1196at 44.135 kb on - strandat 44.173 kb on - strandat 44.175 kb on - strandat 44.186 kb on - strandat 44.281 kb on + strand, within GFF1198at 44.292 kb on - strand, within GFF1198at 44.308 kb on + strand, within GFF1198at 44.384 kb on + strand, within GFF1198at 44.385 kb on - strand, within GFF1198at 44.392 kb on + strand, within GFF1198at 44.393 kb on - strand, within GFF1198at 44.393 kb on - strand, within GFF1198at 44.393 kb on - strand, within GFF1198at 44.443 kb on + strand, within GFF1198at 44.443 kb on + strand, within GFF1198at 44.467 kb on - strand, within GFF1198at 44.496 kb on + strand, within GFF1198at 44.523 kb on - strand, within GFF1198at 44.630 kb on - strand, within GFF1198at 44.630 kb on - strand, within GFF1198at 44.815 kb on + strand, within GFF1198at 44.855 kb on + strand, within GFF1198at 44.855 kb on + strand, within GFF1198at 44.856 kb on - strand, within GFF1198at 44.932 kb on + strandat 44.950 kb on - strandat 44.952 kb on + strandat 44.989 kb on + strandat 44.989 kb on + strandat 44.990 kb on - strandat 45.049 kb on + strandat 45.049 kb on + strandat 45.050 kb on - strandat 45.073 kb on + strand, within GFF1199at 45.074 kb on - strand, within GFF1199at 45.074 kb on - strand, within GFF1199at 45.148 kb on - strand, within GFF1199at 45.148 kb on - strand, within GFF1199at 45.161 kb on + strandat 45.271 kb on + strand, within GFF1200at 45.272 kb on - strand, within GFF1200at 45.282 kb on + strand, within GFF1200at 45.316 kb on + strand, within GFF1200at 45.323 kb on + strand, within GFF1200at 45.382 kb on - strand, within GFF1200at 45.444 kb on + strand, within GFF1200at 45.445 kb on - strand, within GFF1200at 45.452 kb on + strand, within GFF1200at 45.453 kb on - strand, within GFF1200at 45.621 kb on + strand, within GFF1200at 45.622 kb on - strand, within GFF1200at 45.649 kb on + strand, within GFF1200at 45.650 kb on - strand, within GFF1200at 45.795 kb on + strandat 45.795 kb on + strandat 45.795 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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43,334 + -0.8
43,428 + +0.2
43,428 + +0.5
43,428 + -0.3
43,428 + -0.6
43,429 - -1.3
43,432 - +0.3
43,661 + GFF1195 0.54 -0.1
43,661 + GFF1195 0.54 -1.2
43,662 - GFF1195 0.55 -0.1
43,662 - GFF1195 0.55 -0.0
43,787 + GFF1196 0.11 +0.5
43,787 + GFF1196 0.11 +0.1
43,787 + GFF1196 0.11 -0.6
43,788 - GFF1196 0.11 +0.2
43,788 - GFF1196 0.11 -0.1
43,788 - GFF1196 0.11 +0.2
43,817 - GFF1196 0.33 +0.2
43,817 - GFF1196 0.33 +0.2
43,817 - GFF1196 0.33 +0.9
43,842 - GFF1196 0.52 -0.3
43,853 - GFF1196 0.61 -0.0
43,887 + GFF1196 0.86 -0.4
44,135 - +0.4
44,173 - +0.3
44,175 - -0.4
44,186 - -0.6
44,281 + GFF1198 0.12 -0.4
44,292 - GFF1198 0.13 +1.3
44,308 + GFF1198 0.16 +0.6
44,384 + GFF1198 0.26 -0.0
44,385 - GFF1198 0.26 -1.1
44,392 + GFF1198 0.27 +0.2
44,393 - GFF1198 0.27 +0.3
44,393 - GFF1198 0.27 -0.5
44,393 - GFF1198 0.27 +0.1
44,443 + GFF1198 0.33 +1.0
44,443 + GFF1198 0.33 +0.0
44,467 - GFF1198 0.36 +0.4
44,496 + GFF1198 0.40 +0.8
44,523 - GFF1198 0.44 +0.1
44,630 - GFF1198 0.58 +0.8
44,630 - GFF1198 0.58 -0.6
44,815 + GFF1198 0.82 -0.3
44,855 + GFF1198 0.88 +0.9
44,855 + GFF1198 0.88 -0.4
44,856 - GFF1198 0.88 -0.3
44,932 + -0.1
44,950 - +0.0
44,952 + -0.1
44,989 + -0.1
44,989 + -0.1
44,990 - +0.4
45,049 + -0.1
45,049 + +0.3
45,050 - +0.0
45,073 + GFF1199 0.26 -0.8
45,074 - GFF1199 0.27 -0.7
45,074 - GFF1199 0.27 +0.3
45,148 - GFF1199 0.88 -0.1
45,148 - GFF1199 0.88 +1.0
45,161 + -0.0
45,271 + GFF1200 0.10 -1.2
45,272 - GFF1200 0.10 -0.5
45,282 + GFF1200 0.12 +0.3
45,316 + GFF1200 0.18 -0.3
45,323 + GFF1200 0.19 -0.2
45,382 - GFF1200 0.30 +0.1
45,444 + GFF1200 0.41 +0.2
45,445 - GFF1200 0.41 +0.6
45,452 + GFF1200 0.42 +0.2
45,453 - GFF1200 0.43 +0.8
45,621 + GFF1200 0.73 -1.7
45,622 - GFF1200 0.73 -1.4
45,649 + GFF1200 0.78 -0.8
45,650 - GFF1200 0.78 -0.4
45,795 + +0.9
45,795 + -0.3
45,795 + -0.3

Or see this region's nucleotide sequence