Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1075

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1074 and GFF1075 are separated by 384 nucleotidesGFF1075 and GFF1076 are separated by 266 nucleotides GFF1074 - putative inner membrane protein, at 257,085 to 257,756 GFF1074 GFF1075 - FIG00638667: hypothetical protein, at 258,141 to 258,455 GFF1075 GFF1076 - Aerobic respiration control protein arcA, at 258,722 to 259,438 GFF1076 Position (kb) 258 259Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 257.284 kb on - strand, within GFF1074at 257.294 kb on - strand, within GFF1074at 258.272 kb on + strand, within GFF1075at 258.276 kb on - strand, within GFF1075at 258.276 kb on - strand, within GFF1075at 258.292 kb on - strand, within GFF1075at 258.518 kb on - strandat 258.518 kb on - strandat 258.545 kb on + strandat 258.581 kb on + strandat 258.613 kb on - strandat 258.841 kb on + strand, within GFF1076at 259.349 kb on + strand, within GFF1076at 259.356 kb on + strand, within GFF1076at 259.357 kb on - strand, within GFF1076at 259.449 kb on + strandat 259.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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257,284 - GFF1074 0.30 -0.4
257,294 - GFF1074 0.31 -0.7
258,272 + GFF1075 0.42 +0.2
258,276 - GFF1075 0.43 -1.7
258,276 - GFF1075 0.43 +0.5
258,292 - GFF1075 0.48 -1.0
258,518 - +0.3
258,518 - -2.6
258,545 + -0.3
258,581 + +1.0
258,613 - -0.7
258,841 + GFF1076 0.17 -3.2
259,349 + GFF1076 0.87 -2.5
259,356 + GFF1076 0.88 -1.9
259,357 - GFF1076 0.89 -1.8
259,449 + -1.0
259,450 - -4.0

Or see this region's nucleotide sequence