Strain Fitness in Pseudomonas putida KT2440 around PP_1412

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1411 and PP_5470 are separated by 212 nucleotidesPP_5470 and PP_1412 are separated by 44 nucleotidesPP_1412 and PP_1413 are separated by 126 nucleotidesPP_1413 and PP_1414 are separated by 26 nucleotides PP_1411: PP_1411 - GGDEF domain protein, at 1,608,783 to 1,610,264 _1411 PP_5470: PP_5470 - conserved protein of unknown function, at 1,610,477 to 1,610,926 _5470 PP_1412: PP_1412 - 3-hydroxyisobutyryl-CoA hydrolase, at 1,610,971 to 1,612,077 _1412 PP_1413: PP_1413 - Uracil-DNA glycosylase, at 1,612,204 to 1,612,896 _1413 PP_1414: PP_1414 - 5'-nucleotidase - 2',3'-cyclic phosphodiesterase, at 1,612,923 to 1,614,605 _1414 Position (kb) 1610 1611 1612 1613Strain fitness (log2 ratio) -2 -1 0 1at 1609.975 kb on + strand, within PP_1411at 1610.095 kb on + strand, within PP_1411at 1610.167 kb on + strandat 1610.167 kb on + strandat 1610.168 kb on - strandat 1610.168 kb on - strandat 1610.168 kb on - strandat 1610.206 kb on - strandat 1610.256 kb on + strandat 1610.256 kb on + strandat 1610.256 kb on + strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.299 kb on + strandat 1610.299 kb on + strandat 1610.396 kb on + strandat 1610.397 kb on - strandat 1610.397 kb on - strandat 1610.484 kb on - strandat 1610.537 kb on + strand, within PP_5470at 1610.537 kb on + strand, within PP_5470at 1610.540 kb on + strand, within PP_5470at 1610.540 kb on + strand, within PP_5470at 1610.540 kb on + strand, within PP_5470at 1610.541 kb on - strand, within PP_5470at 1610.541 kb on - strandat 1610.541 kb on - strand, within PP_5470at 1610.555 kb on + strand, within PP_5470at 1610.559 kb on - strand, within PP_5470at 1610.570 kb on + strand, within PP_5470at 1610.571 kb on - strand, within PP_5470at 1610.571 kb on - strand, within PP_5470at 1610.571 kb on - strand, within PP_5470at 1610.573 kb on + strand, within PP_5470at 1610.574 kb on - strand, within PP_5470at 1610.574 kb on - strand, within PP_5470at 1610.588 kb on + strand, within PP_5470at 1610.588 kb on + strand, within PP_5470at 1610.589 kb on - strand, within PP_5470at 1610.589 kb on - strand, within PP_5470at 1610.589 kb on - strand, within PP_5470at 1610.589 kb on - strand, within PP_5470at 1610.589 kb on - strand, within PP_5470at 1610.604 kb on - strand, within PP_5470at 1610.622 kb on - strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.624 kb on + strand, within PP_5470at 1610.625 kb on - strand, within PP_5470at 1610.625 kb on - strand, within PP_5470at 1610.625 kb on - strand, within PP_5470at 1610.625 kb on - strand, within PP_5470at 1610.625 kb on - strand, within PP_5470at 1610.628 kb on + strand, within PP_5470at 1610.628 kb on + strand, within PP_5470at 1610.628 kb on + strand, within PP_5470at 1610.629 kb on - strand, within PP_5470at 1610.629 kb on - strand, within PP_5470at 1610.629 kb on - strand, within PP_5470at 1610.629 kb on - strand, within PP_5470at 1610.629 kb on - strand, within PP_5470at 1610.646 kb on - strand, within PP_5470at 1610.646 kb on - strand, within PP_5470at 1610.646 kb on - strand, within PP_5470at 1610.646 kb on - strand, within PP_5470at 1610.648 kb on + strand, within PP_5470at 1610.648 kb on + strand, within PP_5470at 1610.649 kb on - strand, within PP_5470at 1610.649 kb on - strand, within PP_5470at 1610.649 kb on - strand, within PP_5470at 1610.651 kb on + strand, within PP_5470at 1610.652 kb on - strand, within PP_5470at 1610.652 kb on - strand, within PP_5470at 1610.652 kb on - strand, within PP_5470at 1610.670 kb on - strand, within PP_5470at 1610.672 kb on + strand, within PP_5470at 1610.756 kb on + strand, within PP_5470at 1610.756 kb on + strand, within PP_5470at 1610.756 kb on + strand, within PP_5470at 1610.756 kb on + strand, within PP_5470at 1610.756 kb on + strand, within PP_5470at 1610.757 kb on - strand, within PP_5470at 1610.757 kb on - strandat 1610.808 kb on - strand, within PP_5470at 1611.155 kb on + strand, within PP_1412at 1611.188 kb on + strand, within PP_1412at 1611.340 kb on + strand, within PP_1412at 1611.436 kb on + strand, within PP_1412at 1611.437 kb on - strand, within PP_1412at 1611.437 kb on - strand, within PP_1412at 1611.437 kb on - strand, within PP_1412at 1611.437 kb on - strand, within PP_1412at 1611.632 kb on + strand, within PP_1412at 1611.688 kb on + strand, within PP_1412at 1611.688 kb on + strand, within PP_1412at 1611.688 kb on + strand, within PP_1412at 1611.688 kb on + strand, within PP_1412at 1611.688 kb on + strand, within PP_1412at 1611.688 kb on + strand, within PP_1412at 1611.689 kb on - strand, within PP_1412at 1611.689 kb on - strand, within PP_1412at 1611.689 kb on - strand, within PP_1412at 1612.082 kb on + strandat 1612.082 kb on + strandat 1612.082 kb on + strandat 1612.082 kb on + strandat 1612.107 kb on + strandat 1612.107 kb on + strandat 1612.107 kb on + strandat 1612.107 kb on + strandat 1612.108 kb on - strandat 1612.108 kb on - strandat 1612.108 kb on - strandat 1612.169 kb on + strandat 1612.170 kb on - strandat 1612.170 kb on - strandat 1612.170 kb on - strandat 1612.174 kb on - strandat 1612.191 kb on + strandat 1612.276 kb on + strand, within PP_1413at 1612.276 kb on + strand, within PP_1413at 1612.276 kb on + strand, within PP_1413at 1612.276 kb on + strand, within PP_1413at 1612.276 kb on + strand, within PP_1413at 1612.276 kb on + strand, within PP_1413at 1612.277 kb on - strand, within PP_1413at 1612.334 kb on - strand, within PP_1413at 1612.418 kb on - strand, within PP_1413at 1612.495 kb on - strand, within PP_1413at 1612.498 kb on + strand, within PP_1413at 1612.498 kb on + strand, within PP_1413at 1612.499 kb on - strand, within PP_1413at 1612.499 kb on - strand, within PP_1413at 1612.651 kb on - strand, within PP_1413at 1612.706 kb on + strand, within PP_1413at 1612.706 kb on + strand, within PP_1413at 1612.749 kb on + strand, within PP_1413at 1612.798 kb on + strand, within PP_1413at 1612.799 kb on - strand, within PP_1413at 1612.997 kb on - strandat 1612.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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1,609,975 + PP_1411 0.80 -0.1
1,610,095 + PP_1411 0.89 -1.1
1,610,167 + -0.7
1,610,167 + -1.0
1,610,168 - -1.3
1,610,168 - -0.3
1,610,168 - +1.4
1,610,206 - +0.2
1,610,256 + +0.7
1,610,256 + -0.5
1,610,256 + -0.6
1,610,257 - +0.4
1,610,257 - +0.2
1,610,299 + +0.9
1,610,299 + +0.1
1,610,396 + +0.1
1,610,397 - +0.8
1,610,397 - -0.0
1,610,484 - -0.1
1,610,537 + PP_5470 0.13 -0.3
1,610,537 + PP_5470 0.13 -1.1
1,610,540 + PP_5470 0.14 -0.5
1,610,540 + PP_5470 0.14 +0.2
1,610,540 + PP_5470 0.14 -0.4
1,610,541 - PP_5470 0.14 -0.1
1,610,541 - +0.7
1,610,541 - PP_5470 0.14 +1.3
1,610,555 + PP_5470 0.17 +0.5
1,610,559 - PP_5470 0.18 -0.5
1,610,570 + PP_5470 0.21 -0.6
1,610,571 - PP_5470 0.21 -0.8
1,610,571 - PP_5470 0.21 -0.5
1,610,571 - PP_5470 0.21 -0.0
1,610,573 + PP_5470 0.21 -1.5
1,610,574 - PP_5470 0.22 +0.8
1,610,574 - PP_5470 0.22 -0.2
1,610,588 + PP_5470 0.25 +0.4
1,610,588 + PP_5470 0.25 +0.3
1,610,589 - PP_5470 0.25 +0.1
1,610,589 - PP_5470 0.25 +0.2
1,610,589 - PP_5470 0.25 +0.9
1,610,589 - PP_5470 0.25 +0.3
1,610,589 - PP_5470 0.25 -0.3
1,610,604 - PP_5470 0.28 -0.2
1,610,622 - PP_5470 0.32 -0.0
1,610,624 + PP_5470 0.33 +0.8
1,610,624 + PP_5470 0.33 -0.1
1,610,624 + PP_5470 0.33 +0.8
1,610,624 + PP_5470 0.33 -0.1
1,610,624 + PP_5470 0.33 +1.4
1,610,624 + PP_5470 0.33 -0.6
1,610,624 + PP_5470 0.33 +0.9
1,610,624 + PP_5470 0.33 -0.1
1,610,624 + PP_5470 0.33 +0.6
1,610,624 + PP_5470 0.33 -0.1
1,610,624 + PP_5470 0.33 +0.4
1,610,624 + PP_5470 0.33 -0.1
1,610,624 + PP_5470 0.33 +0.6
1,610,625 - PP_5470 0.33 +0.3
1,610,625 - PP_5470 0.33 +0.5
1,610,625 - PP_5470 0.33 -1.6
1,610,625 - PP_5470 0.33 -0.1
1,610,625 - PP_5470 0.33 +0.2
1,610,628 + PP_5470 0.34 -0.8
1,610,628 + PP_5470 0.34 -0.2
1,610,628 + PP_5470 0.34 +0.1
1,610,629 - PP_5470 0.34 +0.4
1,610,629 - PP_5470 0.34 +0.6
1,610,629 - PP_5470 0.34 +0.1
1,610,629 - PP_5470 0.34 -1.8
1,610,629 - PP_5470 0.34 +0.3
1,610,646 - PP_5470 0.38 -0.4
1,610,646 - PP_5470 0.38 +0.3
1,610,646 - PP_5470 0.38 +0.9
1,610,646 - PP_5470 0.38 -0.0
1,610,648 + PP_5470 0.38 +0.7
1,610,648 + PP_5470 0.38 +0.5
1,610,649 - PP_5470 0.38 +0.5
1,610,649 - PP_5470 0.38 +1.0
1,610,649 - PP_5470 0.38 -0.7
1,610,651 + PP_5470 0.39 -1.0
1,610,652 - PP_5470 0.39 +0.3
1,610,652 - PP_5470 0.39 +0.2
1,610,652 - PP_5470 0.39 +0.2
1,610,670 - PP_5470 0.43 +0.8
1,610,672 + PP_5470 0.43 -0.1
1,610,756 + PP_5470 0.62 +0.0
1,610,756 + PP_5470 0.62 -1.4
1,610,756 + PP_5470 0.62 -0.7
1,610,756 + PP_5470 0.62 +0.3
1,610,756 + PP_5470 0.62 +0.9
1,610,757 - PP_5470 0.62 +0.0
1,610,757 - +1.7
1,610,808 - PP_5470 0.74 -0.9
1,611,155 + PP_1412 0.17 +0.2
1,611,188 + PP_1412 0.20 +0.2
1,611,340 + PP_1412 0.33 -0.0
1,611,436 + PP_1412 0.42 -0.3
1,611,437 - PP_1412 0.42 -0.2
1,611,437 - PP_1412 0.42 -1.1
1,611,437 - PP_1412 0.42 -0.6
1,611,437 - PP_1412 0.42 -0.1
1,611,632 + PP_1412 0.60 -0.3
1,611,688 + PP_1412 0.65 -0.0
1,611,688 + PP_1412 0.65 +0.3
1,611,688 + PP_1412 0.65 +0.3
1,611,688 + PP_1412 0.65 +0.6
1,611,688 + PP_1412 0.65 -0.2
1,611,688 + PP_1412 0.65 -0.6
1,611,689 - PP_1412 0.65 -0.1
1,611,689 - PP_1412 0.65 +0.5
1,611,689 - PP_1412 0.65 +1.0
1,612,082 + +0.5
1,612,082 + -0.0
1,612,082 + -0.7
1,612,082 + -0.2
1,612,107 + -1.0
1,612,107 + +0.1
1,612,107 + +0.3
1,612,107 + +1.5
1,612,108 - -1.6
1,612,108 - +0.2
1,612,108 - -0.1
1,612,169 + +0.2
1,612,170 - +0.0
1,612,170 - +0.1
1,612,170 - +1.1
1,612,174 - -0.3
1,612,191 + -0.1
1,612,276 + PP_1413 0.10 +0.6
1,612,276 + PP_1413 0.10 -0.1
1,612,276 + PP_1413 0.10 -0.3
1,612,276 + PP_1413 0.10 +0.6
1,612,276 + PP_1413 0.10 +1.5
1,612,276 + PP_1413 0.10 +1.1
1,612,277 - PP_1413 0.11 +0.3
1,612,334 - PP_1413 0.19 +0.2
1,612,418 - PP_1413 0.31 +0.7
1,612,495 - PP_1413 0.42 -1.0
1,612,498 + PP_1413 0.42 -1.3
1,612,498 + PP_1413 0.42 +0.5
1,612,499 - PP_1413 0.43 +1.0
1,612,499 - PP_1413 0.43 +1.1
1,612,651 - PP_1413 0.65 +0.1
1,612,706 + PP_1413 0.72 -0.7
1,612,706 + PP_1413 0.72 -0.5
1,612,749 + PP_1413 0.79 -1.1
1,612,798 + PP_1413 0.86 -0.5
1,612,799 - PP_1413 0.86 -0.2
1,612,997 - -0.3
1,612,997 - +0.3

Or see this region's nucleotide sequence