Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0826 and PP_0827 overlap by 4 nucleotides PP_0827 and PP_0828 are separated by 36 nucleotides PP_0828 and PP_0829 are separated by 318 nucleotides PP_0829 and PP_0830 are separated by 10 nucleotides
PP_0826: PP_0826 - phosphonate ABC transporter, permease protein, at 964,195 to 965,022
_0826
PP_0827: PP_0827 - putative phosphonate transport system permease protein PtxC, at 965,019 to 965,786
_0827
PP_0828: PP_0828 - conserved membrane protein of unknown function, at 965,823 to 966,716
_0828
PP_0829: PP_0829 - conserved protein of unknown function, at 967,035 to 967,331
_0829
PP_0830: PP_0830 - Acetyltransferase, GNAT family, at 967,342 to 967,821
_0830
Position (kb) 965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 964.823 kb on - strand, within PP_0826 at 964.831 kb on + strand, within PP_0826 at 965.085 kb on + strand at 965.580 kb on - strand, within PP_0827 at 965.664 kb on + strand, within PP_0827 at 965.664 kb on + strand, within PP_0827 at 965.664 kb on + strand, within PP_0827 at 965.717 kb on + strand at 965.717 kb on + strand at 965.896 kb on - strand at 965.900 kb on + strand at 965.900 kb on + strand at 965.900 kb on + strand at 965.901 kb on - strand at 965.901 kb on - strand at 965.901 kb on - strand at 965.901 kb on - strand at 966.083 kb on - strand, within PP_0828 at 966.083 kb on - strand, within PP_0828 at 966.088 kb on + strand, within PP_0828 at 966.088 kb on + strand, within PP_0828 at 966.088 kb on + strand, within PP_0828 at 966.089 kb on - strand, within PP_0828 at 966.089 kb on - strand, within PP_0828 at 966.089 kb on - strand, within PP_0828 at 966.107 kb on + strand, within PP_0828 at 966.150 kb on + strand, within PP_0828 at 966.151 kb on - strand, within PP_0828 at 966.151 kb on - strand, within PP_0828 at 966.206 kb on - strand, within PP_0828 at 966.358 kb on + strand, within PP_0828 at 966.366 kb on - strand, within PP_0828 at 966.664 kb on + strand at 966.665 kb on - strand at 966.851 kb on + strand at 966.852 kb on - strand at 966.852 kb on - strand at 966.852 kb on - strand at 966.852 kb on - strand at 966.909 kb on - strand at 966.980 kb on + strand at 966.981 kb on - strand at 967.101 kb on + strand, within PP_0829 at 967.101 kb on + strand, within PP_0829 at 967.102 kb on - strand, within PP_0829 at 967.102 kb on - strand, within PP_0829 at 967.106 kb on + strand, within PP_0829 at 967.118 kb on - strand, within PP_0829 at 967.118 kb on - strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.187 kb on + strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.188 kb on - strand, within PP_0829 at 967.224 kb on + strand, within PP_0829 at 967.225 kb on - strand, within PP_0829 at 967.225 kb on - strand, within PP_0829 at 967.225 kb on - strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.267 kb on + strand, within PP_0829 at 967.268 kb on - strand, within PP_0829 at 967.268 kb on - strand, within PP_0829 at 967.268 kb on - strand, within PP_0829 at 967.268 kb on - strand, within PP_0829 at 967.268 kb on - strand, within PP_0829 at 967.343 kb on + strand at 967.351 kb on + strand at 967.351 kb on + strand at 967.352 kb on - strand at 967.352 kb on - strand at 967.499 kb on + strand, within PP_0830 at 967.499 kb on + strand, within PP_0830 at 967.500 kb on - strand, within PP_0830 at 967.500 kb on - strand, within PP_0830 at 967.500 kb on - strand, within PP_0830 at 967.547 kb on - strand, within PP_0830 at 967.547 kb on - strand, within PP_0830 at 967.579 kb on + strand, within PP_0830 at 967.597 kb on + strand, within PP_0830 at 967.597 kb on + strand, within PP_0830 at 967.598 kb on - strand, within PP_0830 at 967.598 kb on - strand, within PP_0830 at 967.598 kb on - strand, within PP_0830
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 964,823 - PP_0826 0.76 -0.3 964,831 + PP_0826 0.77 -0.5 965,085 + +0.2 965,580 - PP_0827 0.73 -1.4 965,664 + PP_0827 0.84 -3.2 965,664 + PP_0827 0.84 -1.4 965,664 + PP_0827 0.84 -1.1 965,717 + +0.6 965,717 + +0.0 965,896 - +0.5 965,900 + +0.5 965,900 + -1.1 965,900 + -0.3 965,901 - -0.2 965,901 - +0.5 965,901 - -1.7 965,901 - -1.6 966,083 - PP_0828 0.29 -0.4 966,083 - PP_0828 0.29 +0.2 966,088 + PP_0828 0.30 -1.0 966,088 + PP_0828 0.30 -1.1 966,088 + PP_0828 0.30 -0.0 966,089 - PP_0828 0.30 -0.7 966,089 - PP_0828 0.30 -0.1 966,089 - PP_0828 0.30 +1.7 966,107 + PP_0828 0.32 -0.2 966,150 + PP_0828 0.37 +1.2 966,151 - PP_0828 0.37 -0.9 966,151 - PP_0828 0.37 -0.6 966,206 - PP_0828 0.43 -0.2 966,358 + PP_0828 0.60 +1.3 966,366 - PP_0828 0.61 +0.6 966,664 + -0.4 966,665 - +1.0 966,851 + -0.5 966,852 - -0.7 966,852 - -0.8 966,852 - -0.2 966,852 - +0.3 966,909 - +0.3 966,980 + +0.6 966,981 - -0.5 967,101 + PP_0829 0.22 -0.6 967,101 + PP_0829 0.22 +0.6 967,102 - PP_0829 0.23 +0.2 967,102 - PP_0829 0.23 +1.0 967,106 + PP_0829 0.24 +0.9 967,118 - PP_0829 0.28 +0.0 967,118 - PP_0829 0.28 -0.3 967,187 + PP_0829 0.51 +0.0 967,187 + PP_0829 0.51 -0.9 967,187 + PP_0829 0.51 -0.2 967,187 + PP_0829 0.51 -0.5 967,187 + PP_0829 0.51 -0.5 967,187 + PP_0829 0.51 -0.7 967,187 + PP_0829 0.51 +0.3 967,187 + PP_0829 0.51 -1.9 967,188 - PP_0829 0.52 -1.2 967,188 - PP_0829 0.52 +0.5 967,188 - PP_0829 0.52 -1.2 967,188 - PP_0829 0.52 -0.2 967,188 - PP_0829 0.52 +0.5 967,188 - PP_0829 0.52 +0.1 967,188 - PP_0829 0.52 -0.6 967,188 - PP_0829 0.52 -0.3 967,188 - PP_0829 0.52 +0.1 967,188 - PP_0829 0.52 +0.6 967,224 + PP_0829 0.64 -0.6 967,225 - PP_0829 0.64 -0.9 967,225 - PP_0829 0.64 +0.2 967,225 - PP_0829 0.64 -0.2 967,267 + PP_0829 0.78 +0.7 967,267 + PP_0829 0.78 +0.0 967,267 + PP_0829 0.78 +0.4 967,267 + PP_0829 0.78 +0.8 967,267 + PP_0829 0.78 +0.6 967,267 + PP_0829 0.78 +0.5 967,267 + PP_0829 0.78 +0.2 967,267 + PP_0829 0.78 +1.1 967,268 - PP_0829 0.78 -0.5 967,268 - PP_0829 0.78 +1.9 967,268 - PP_0829 0.78 -0.3 967,268 - PP_0829 0.78 -0.5 967,268 - PP_0829 0.78 -0.7 967,343 + +0.0 967,351 + -0.1 967,351 + -0.5 967,352 - +1.3 967,352 - -0.1 967,499 + PP_0830 0.33 -0.1 967,499 + PP_0830 0.33 +0.3 967,500 - PP_0830 0.33 +0.1 967,500 - PP_0830 0.33 +0.1 967,500 - PP_0830 0.33 -0.8 967,547 - PP_0830 0.43 -1.4 967,547 - PP_0830 0.43 +0.5 967,579 + PP_0830 0.49 +0.3 967,597 + PP_0830 0.53 +1.1 967,597 + PP_0830 0.53 -0.6 967,598 - PP_0830 0.53 -0.2 967,598 - PP_0830 0.53 +0.3 967,598 - PP_0830 0.53 +2.1
Or see this region's nucleotide sequence