Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF694

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF693 and GFF694 overlap by 8 nucleotidesGFF694 and GFF695 overlap by 1 nucleotidesGFF695 and GFF696 are separated by 229 nucleotides GFF693 - ABC transporter multidrug efflux pump, fused ATP-binding domains, at 49,022 to 50,758 GFF693 GFF694 - Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG, at 50,751 to 51,746 GFF694 GFF695 - Transcriptional regulator YbiH, TetR family, at 51,746 to 52,420 GFF695 GFF696 - ATP-dependent RNA helicase RhlE, at 52,650 to 54,014 GFF696 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1at 49.801 kb on + strand, within GFF693at 49.858 kb on + strand, within GFF693at 50.021 kb on + strand, within GFF693at 50.030 kb on - strand, within GFF693at 50.051 kb on - strand, within GFF693at 50.095 kb on + strand, within GFF693at 50.096 kb on - strand, within GFF693at 50.170 kb on - strand, within GFF693at 50.455 kb on + strand, within GFF693at 50.474 kb on - strand, within GFF693at 50.506 kb on + strand, within GFF693at 50.659 kb on - strandat 50.675 kb on - strandat 50.675 kb on - strandat 51.013 kb on + strand, within GFF694at 51.051 kb on + strand, within GFF694at 51.457 kb on + strand, within GFF694at 51.555 kb on - strand, within GFF694at 51.641 kb on - strand, within GFF694at 51.673 kb on + strandat 51.781 kb on + strandat 51.781 kb on + strandat 51.782 kb on - strandat 51.782 kb on - strandat 51.916 kb on + strand, within GFF695at 51.935 kb on - strand, within GFF695at 52.099 kb on + strand, within GFF695at 52.248 kb on - strand, within GFF695at 52.277 kb on - strand, within GFF695at 52.415 kb on - strandat 52.645 kb on + strandat 52.649 kb on + strandat 52.649 kb on + strandat 52.650 kb on - strandat 52.682 kb on + strandat 52.721 kb on + strandat 52.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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49,801 + GFF693 0.45 +0.0
49,858 + GFF693 0.48 -1.6
50,021 + GFF693 0.58 -0.2
50,030 - GFF693 0.58 +0.1
50,051 - GFF693 0.59 -0.1
50,095 + GFF693 0.62 -0.3
50,096 - GFF693 0.62 +0.5
50,170 - GFF693 0.66 +0.2
50,455 + GFF693 0.82 -0.1
50,474 - GFF693 0.84 +0.1
50,506 + GFF693 0.85 +1.4
50,659 - +0.1
50,675 - -0.2
50,675 - +0.3
51,013 + GFF694 0.26 -1.0
51,051 + GFF694 0.30 -0.1
51,457 + GFF694 0.71 -0.4
51,555 - GFF694 0.81 -0.3
51,641 - GFF694 0.89 -3.3
51,673 + +0.3
51,781 + -0.8
51,781 + +0.9
51,782 - +0.3
51,782 - -0.2
51,916 + GFF695 0.25 +0.8
51,935 - GFF695 0.28 -0.2
52,099 + GFF695 0.52 +0.3
52,248 - GFF695 0.74 -0.1
52,277 - GFF695 0.79 -0.0
52,415 - +0.0
52,645 + +0.3
52,649 + +0.9
52,649 + +1.3
52,650 - -0.3
52,682 + +0.7
52,721 + -0.6
52,722 - -0.4

Or see this region's nucleotide sequence