Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4385 and GFF4386 are separated by 68 nucleotides GFF4386 and GFF4387 are separated by 152 nucleotides GFF4387 and GFF4388 are separated by 113 nucleotides
GFF4385 - Primosomal replication protein N prime prime, at 169,330 to 169,857
GFF4385
GFF4386 - FIG039061: hypothetical protein related to heme utilization, at 169,926 to 170,303
GFF4386
GFF4387 - Adenine phosphoribosyltransferase (EC 2.4.2.7), at 170,456 to 171,007
GFF4387
GFF4388 - DNA polymerase III subunits gamma and tau (EC 2.7.7.7), at 171,121 to 173,049
GFF4388
Position (kb)
170
171
172 Strain fitness (log2 ratio)
-1
0
1 at 169.837 kb on + strand at 169.838 kb on - strand at 169.892 kb on + strand at 169.935 kb on - strand at 169.937 kb on + strand at 169.937 kb on + strand at 169.969 kb on + strand, within GFF4386 at 170.078 kb on - strand, within GFF4386 at 170.168 kb on - strand, within GFF4386 at 170.184 kb on - strand, within GFF4386 at 170.437 kb on - strand at 170.437 kb on - strand at 170.449 kb on + strand at 170.449 kb on + strand at 170.449 kb on + strand at 170.449 kb on + strand at 170.450 kb on - strand at 170.450 kb on - strand at 170.727 kb on + strand, within GFF4387 at 170.754 kb on - strand, within GFF4387
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 169,837 + +1.2 169,838 - +0.1 169,892 + +0.9 169,935 - +1.1 169,937 + -0.1 169,937 + +0.3 169,969 + GFF4386 0.11 -0.0 170,078 - GFF4386 0.40 +0.2 170,168 - GFF4386 0.64 -0.8 170,184 - GFF4386 0.68 +1.1 170,437 - -0.5 170,437 - -0.0 170,449 + -1.2 170,449 + +0.3 170,449 + +0.4 170,449 + -0.8 170,450 - +0.1 170,450 - -0.3 170,727 + GFF4387 0.49 -0.9 170,754 - GFF4387 0.54 -0.1
Or see this region's nucleotide sequence