Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3668 and GFF3669 are separated by 155 nucleotides GFF3669 and GFF3670 are separated by 280 nucleotides GFF3670 and GFF3671 are separated by 36 nucleotides
GFF3668 - SSU ribosomal protein S1p, at 17,391 to 19,064
GFF3668
GFF3669 - Integration host factor beta subunit, at 19,220 to 19,504
GFF3669
GFF3670 - DNA internalization-related competence protein ComEC/Rec2, at 19,785 to 21,998
GFF3670
GFF3671 - Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25), at 22,035 to 23,783
GFF3671
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 19.109 kb on - strand at 19.136 kb on + strand at 19.315 kb on + strand, within GFF3669 at 19.315 kb on + strand, within GFF3669 at 19.562 kb on + strand at 19.763 kb on - strand at 19.766 kb on - strand at 19.789 kb on + strand at 19.799 kb on - strand at 19.808 kb on + strand at 19.888 kb on + strand at 20.004 kb on - strand at 20.086 kb on - strand, within GFF3670 at 20.160 kb on - strand, within GFF3670 at 20.271 kb on + strand, within GFF3670 at 20.544 kb on + strand, within GFF3670 at 20.544 kb on + strand, within GFF3670 at 20.545 kb on - strand, within GFF3670 at 20.564 kb on - strand, within GFF3670 at 20.881 kb on + strand, within GFF3670 at 20.881 kb on + strand, within GFF3670 at 20.882 kb on - strand, within GFF3670 at 20.975 kb on - strand, within GFF3670 at 21.010 kb on - strand, within GFF3670 at 21.292 kb on + strand, within GFF3670 at 21.292 kb on + strand, within GFF3670 at 21.292 kb on + strand, within GFF3670 at 21.292 kb on + strand, within GFF3670 at 21.295 kb on + strand, within GFF3670 at 21.619 kb on + strand, within GFF3670 at 21.620 kb on - strand, within GFF3670 at 21.623 kb on + strand, within GFF3670 at 21.623 kb on + strand, within GFF3670 at 21.623 kb on + strand, within GFF3670 at 21.728 kb on + strand, within GFF3670 at 21.729 kb on - strand, within GFF3670 at 21.731 kb on + strand, within GFF3670 at 21.731 kb on + strand, within GFF3670 at 21.731 kb on + strand, within GFF3670 at 21.734 kb on + strand, within GFF3670 at 21.734 kb on + strand, within GFF3670 at 21.734 kb on + strand, within GFF3670 at 21.734 kb on + strand, within GFF3670 at 21.734 kb on + strand, within GFF3670 at 21.766 kb on + strand, within GFF3670 at 21.872 kb on + strand at 21.925 kb on + strand at 21.926 kb on - strand at 21.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 19,109 - -2.0 19,136 + +0.6 19,315 + GFF3669 0.33 -0.8 19,315 + GFF3669 0.33 +0.0 19,562 + -0.1 19,763 - +0.3 19,766 - +0.1 19,789 + -0.2 19,799 - +0.9 19,808 + -0.4 19,888 + +0.9 20,004 - -0.0 20,086 - GFF3670 0.14 +1.0 20,160 - GFF3670 0.17 +1.0 20,271 + GFF3670 0.22 +0.2 20,544 + GFF3670 0.34 -0.1 20,544 + GFF3670 0.34 -0.1 20,545 - GFF3670 0.34 +0.2 20,564 - GFF3670 0.35 +0.6 20,881 + GFF3670 0.50 +0.0 20,881 + GFF3670 0.50 +0.4 20,882 - GFF3670 0.50 -1.5 20,975 - GFF3670 0.54 -0.2 21,010 - GFF3670 0.55 -0.2 21,292 + GFF3670 0.68 +0.6 21,292 + GFF3670 0.68 +0.1 21,292 + GFF3670 0.68 +0.0 21,292 + GFF3670 0.68 +0.6 21,295 + GFF3670 0.68 +0.5 21,619 + GFF3670 0.83 -0.4 21,620 - GFF3670 0.83 +0.1 21,623 + GFF3670 0.83 +0.7 21,623 + GFF3670 0.83 +0.5 21,623 + GFF3670 0.83 +0.3 21,728 + GFF3670 0.88 +0.1 21,729 - GFF3670 0.88 -0.4 21,731 + GFF3670 0.88 -0.6 21,731 + GFF3670 0.88 -0.2 21,731 + GFF3670 0.88 -0.3 21,734 + GFF3670 0.88 -0.6 21,734 + GFF3670 0.88 +0.0 21,734 + GFF3670 0.88 +0.2 21,734 + GFF3670 0.88 +0.1 21,734 + GFF3670 0.88 -0.3 21,766 + GFF3670 0.89 +0.3 21,872 + -0.5 21,925 + -0.0 21,926 - +0.3 21,926 - +0.6
Or see this region's nucleotide sequence