Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF349

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF348 and GFF349 are separated by 11 nucleotidesGFF349 and GFF350 are separated by 102 nucleotides GFF348 - Xyloside transporter XynT, at 64,790 to 66,172 GFF348 GFF349 - Alpha-xylosidase (EC 3.2.1.-), at 66,184 to 68,502 GFF349 GFF350 - FIG01200701: possible membrane protein, at 68,605 to 70,284 GFF350 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 65.196 kb on + strand, within GFF348at 65.196 kb on + strand, within GFF348at 65.199 kb on + strand, within GFF348at 65.221 kb on + strand, within GFF348at 65.221 kb on + strand, within GFF348at 65.221 kb on + strand, within GFF348at 65.222 kb on - strand, within GFF348at 65.432 kb on - strand, within GFF348at 65.510 kb on - strand, within GFF348at 65.546 kb on + strand, within GFF348at 65.547 kb on - strand, within GFF348at 65.547 kb on - strand, within GFF348at 65.603 kb on + strand, within GFF348at 65.603 kb on + strand, within GFF348at 65.604 kb on - strand, within GFF348at 65.778 kb on + strand, within GFF348at 65.778 kb on + strand, within GFF348at 66.019 kb on + strand, within GFF348at 66.062 kb on - strandat 66.071 kb on + strandat 66.170 kb on + strandat 66.184 kb on - strandat 66.225 kb on + strandat 66.287 kb on - strandat 66.378 kb on - strandat 66.568 kb on - strand, within GFF349at 66.628 kb on + strand, within GFF349at 66.629 kb on - strand, within GFF349at 66.763 kb on + strand, within GFF349at 66.764 kb on - strand, within GFF349at 66.764 kb on - strand, within GFF349at 66.772 kb on - strand, within GFF349at 66.781 kb on + strand, within GFF349at 66.781 kb on + strand, within GFF349at 66.782 kb on - strand, within GFF349at 66.889 kb on + strand, within GFF349at 66.890 kb on - strand, within GFF349at 66.899 kb on - strand, within GFF349at 66.944 kb on - strand, within GFF349at 67.228 kb on + strand, within GFF349at 67.229 kb on - strand, within GFF349at 67.317 kb on + strand, within GFF349at 67.375 kb on + strand, within GFF349at 67.376 kb on - strand, within GFF349at 67.507 kb on + strand, within GFF349at 67.514 kb on - strand, within GFF349at 67.633 kb on + strand, within GFF349at 67.835 kb on - strand, within GFF349at 67.897 kb on + strand, within GFF349at 68.040 kb on - strand, within GFF349at 68.181 kb on + strand, within GFF349at 68.182 kb on - strand, within GFF349at 68.182 kb on - strand, within GFF349at 68.187 kb on - strand, within GFF349at 68.403 kb on + strandat 68.403 kb on + strandat 68.459 kb on + strandat 68.460 kb on - strandat 68.460 kb on - strandat 68.494 kb on - strandat 68.500 kb on + strandat 68.546 kb on + strandat 68.629 kb on - strandat 68.671 kb on + strandat 68.702 kb on - strandat 68.745 kb on + strandat 68.770 kb on - strandat 68.815 kb on + strand, within GFF350at 68.830 kb on + strand, within GFF350at 69.206 kb on - strand, within GFF350at 69.231 kb on + strand, within GFF350at 69.232 kb on - strand, within GFF350at 69.233 kb on + strand, within GFF350

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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65,196 + GFF348 0.29 +0.3
65,196 + GFF348 0.29 -0.4
65,199 + GFF348 0.30 +1.2
65,221 + GFF348 0.31 -0.7
65,221 + GFF348 0.31 +0.3
65,221 + GFF348 0.31 +0.3
65,222 - GFF348 0.31 +0.7
65,432 - GFF348 0.46 +0.1
65,510 - GFF348 0.52 -0.2
65,546 + GFF348 0.55 -0.3
65,547 - GFF348 0.55 -0.2
65,547 - GFF348 0.55 -0.7
65,603 + GFF348 0.59 -0.5
65,603 + GFF348 0.59 +0.3
65,604 - GFF348 0.59 +0.7
65,778 + GFF348 0.71 -0.1
65,778 + GFF348 0.71 +0.2
66,019 + GFF348 0.89 -0.1
66,062 - +0.1
66,071 + +0.1
66,170 + -0.1
66,184 - -0.2
66,225 + -0.3
66,287 - +0.1
66,378 - -0.3
66,568 - GFF349 0.17 +0.7
66,628 + GFF349 0.19 +0.4
66,629 - GFF349 0.19 +0.9
66,763 + GFF349 0.25 -0.3
66,764 - GFF349 0.25 -0.8
66,764 - GFF349 0.25 -0.9
66,772 - GFF349 0.25 +0.1
66,781 + GFF349 0.26 +0.2
66,781 + GFF349 0.26 +0.4
66,782 - GFF349 0.26 +1.1
66,889 + GFF349 0.30 +1.1
66,890 - GFF349 0.30 -0.2
66,899 - GFF349 0.31 -0.8
66,944 - GFF349 0.33 +0.1
67,228 + GFF349 0.45 -0.5
67,229 - GFF349 0.45 +0.1
67,317 + GFF349 0.49 -1.2
67,375 + GFF349 0.51 +0.2
67,376 - GFF349 0.51 +0.2
67,507 + GFF349 0.57 -1.2
67,514 - GFF349 0.57 -1.1
67,633 + GFF349 0.62 -0.6
67,835 - GFF349 0.71 -0.6
67,897 + GFF349 0.74 -0.6
68,040 - GFF349 0.80 -0.3
68,181 + GFF349 0.86 -1.8
68,182 - GFF349 0.86 -0.1
68,182 - GFF349 0.86 +0.1
68,187 - GFF349 0.86 -0.1
68,403 + +0.4
68,403 + +0.3
68,459 + +0.0
68,460 - -0.2
68,460 - -0.3
68,494 - -0.2
68,500 + -0.1
68,546 + +0.5
68,629 - +0.3
68,671 + +2.2
68,702 - +2.2
68,745 + -2.1
68,770 - -0.1
68,815 + GFF350 0.12 -0.5
68,830 + GFF350 0.13 -1.0
69,206 - GFF350 0.36 -0.4
69,231 + GFF350 0.37 +0.3
69,232 - GFF350 0.37 -0.4
69,233 + GFF350 0.37 +0.5

Or see this region's nucleotide sequence