Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3024

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3022 and GFF3023 are separated by 373 nucleotidesGFF3023 and GFF3024 are separated by 25 nucleotidesGFF3024 and GFF3025 are separated by 0 nucleotidesGFF3025 and GFF3026 overlap by 13 nucleotides GFF3022 - D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72), at 37,011 to 38,057 GFF3022 GFF3023 - Predicted regulator of STY3230 transporter operon, at 38,431 to 38,856 GFF3023 GFF3024 - Substrate-specific component STY3230 of queuosine-regulated ECF transporter, at 38,882 to 39,460 GFF3024 GFF3025 - Transmembrane component STY3231 of energizing module of queuosine-regulated ECF transporter, at 39,461 to 40,168 GFF3025 GFF3026 - ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter, at 40,156 to 40,833 GFF3026 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1at 38.050 kb on - strandat 38.057 kb on + strandat 38.057 kb on + strandat 38.057 kb on + strandat 38.058 kb on - strandat 38.103 kb on - strandat 38.103 kb on - strandat 38.216 kb on + strandat 38.250 kb on + strandat 38.251 kb on - strandat 38.300 kb on + strandat 38.318 kb on - strandat 38.364 kb on - strandat 38.389 kb on + strandat 38.389 kb on + strandat 38.389 kb on + strandat 38.390 kb on - strandat 38.390 kb on - strandat 38.439 kb on - strandat 38.439 kb on - strandat 38.439 kb on - strandat 38.457 kb on + strandat 38.514 kb on - strand, within GFF3023at 38.541 kb on - strand, within GFF3023at 38.730 kb on + strand, within GFF3023at 38.731 kb on - strand, within GFF3023at 38.745 kb on + strand, within GFF3023at 38.842 kb on - strandat 38.882 kb on - strandat 38.932 kb on + strandat 38.944 kb on + strand, within GFF3024at 38.945 kb on - strand, within GFF3024at 38.945 kb on - strand, within GFF3024at 38.945 kb on - strand, within GFF3024at 38.946 kb on - strand, within GFF3024at 39.009 kb on + strand, within GFF3024at 39.013 kb on + strand, within GFF3024at 39.061 kb on - strand, within GFF3024at 39.208 kb on + strand, within GFF3024at 39.209 kb on - strand, within GFF3024at 39.348 kb on + strand, within GFF3024at 39.349 kb on - strand, within GFF3024at 39.368 kb on - strand, within GFF3024at 39.421 kb on + strandat 39.459 kb on - strandat 39.486 kb on + strandat 39.546 kb on - strand, within GFF3025at 39.605 kb on + strand, within GFF3025at 39.606 kb on - strand, within GFF3025at 39.606 kb on - strand, within GFF3025at 39.651 kb on + strand, within GFF3025at 39.652 kb on - strand, within GFF3025at 39.732 kb on + strand, within GFF3025at 39.733 kb on - strand, within GFF3025at 39.765 kb on + strand, within GFF3025at 39.765 kb on + strand, within GFF3025at 39.766 kb on - strand, within GFF3025at 39.766 kb on - strand, within GFF3025at 39.776 kb on + strand, within GFF3025at 39.777 kb on - strand, within GFF3025at 39.777 kb on - strand, within GFF3025at 39.840 kb on - strand, within GFF3025at 39.944 kb on + strand, within GFF3025at 40.087 kb on + strand, within GFF3025at 40.095 kb on + strand, within GFF3025at 40.156 kb on - strandat 40.161 kb on + strandat 40.161 kb on + strandat 40.162 kb on - strandat 40.349 kb on + strand, within GFF3026at 40.350 kb on - strand, within GFF3026at 40.430 kb on + strand, within GFF3026

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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38,050 - +0.5
38,057 + +0.2
38,057 + -0.1
38,057 + +0.1
38,058 - -0.0
38,103 - -0.3
38,103 - +0.6
38,216 + -1.0
38,250 + +0.2
38,251 - -0.9
38,300 + -0.1
38,318 - +0.6
38,364 - -0.6
38,389 + -0.3
38,389 + -0.2
38,389 + +0.0
38,390 - +0.4
38,390 - +0.3
38,439 - +0.9
38,439 - +0.2
38,439 - +0.9
38,457 + +0.0
38,514 - GFF3023 0.19 -0.4
38,541 - GFF3023 0.26 +0.0
38,730 + GFF3023 0.70 +0.4
38,731 - GFF3023 0.70 -0.1
38,745 + GFF3023 0.74 +0.2
38,842 - +0.1
38,882 - +0.0
38,932 + +1.0
38,944 + GFF3024 0.11 -0.0
38,945 - GFF3024 0.11 -0.1
38,945 - GFF3024 0.11 +0.3
38,945 - GFF3024 0.11 +0.1
38,946 - GFF3024 0.11 -0.1
39,009 + GFF3024 0.22 -1.0
39,013 + GFF3024 0.23 -0.8
39,061 - GFF3024 0.31 -1.2
39,208 + GFF3024 0.56 -1.2
39,209 - GFF3024 0.56 -0.1
39,348 + GFF3024 0.80 +0.1
39,349 - GFF3024 0.81 +0.2
39,368 - GFF3024 0.84 -1.3
39,421 + +0.9
39,459 - -0.2
39,486 + +0.5
39,546 - GFF3025 0.12 +0.4
39,605 + GFF3025 0.20 +0.6
39,606 - GFF3025 0.20 +0.1
39,606 - GFF3025 0.20 -0.1
39,651 + GFF3025 0.27 -0.1
39,652 - GFF3025 0.27 -0.8
39,732 + GFF3025 0.38 -0.3
39,733 - GFF3025 0.38 -0.2
39,765 + GFF3025 0.43 +0.2
39,765 + GFF3025 0.43 +0.1
39,766 - GFF3025 0.43 +0.3
39,766 - GFF3025 0.43 -0.6
39,776 + GFF3025 0.44 -0.4
39,777 - GFF3025 0.45 -0.6
39,777 - GFF3025 0.45 +0.1
39,840 - GFF3025 0.54 -1.6
39,944 + GFF3025 0.68 +0.8
40,087 + GFF3025 0.88 -0.1
40,095 + GFF3025 0.90 +0.3
40,156 - +0.4
40,161 + +0.3
40,161 + +0.0
40,162 - +0.5
40,349 + GFF3026 0.28 -0.1
40,350 - GFF3026 0.29 +0.2
40,430 + GFF3026 0.40 -0.2

Or see this region's nucleotide sequence