Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2627

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2625 and GFF2626 are separated by 24 nucleotidesGFF2626 and GFF2627 overlap by 4 nucleotidesGFF2627 and GFF2628 are separated by 136 nucleotides GFF2625 - Putative ABC amino acid transporter permease, at 150,541 to 150,924 GFF2625 GFF2626 - ABC transporter ATP-binding subunit, at 150,949 to 151,680 GFF2626 GFF2627 - putative amino acid ABC transporter, at 151,677 to 152,357 GFF2627 GFF2628 - putative membrane protein, at 152,494 to 154,044 GFF2628 Position (kb) 151 152 153Strain fitness (log2 ratio) -1 0 1at 150.761 kb on - strand, within GFF2625at 150.978 kb on + strandat 151.263 kb on + strand, within GFF2626at 151.264 kb on - strand, within GFF2626at 151.307 kb on + strand, within GFF2626at 151.341 kb on + strand, within GFF2626at 151.557 kb on - strand, within GFF2626at 152.098 kb on + strand, within GFF2627at 152.279 kb on + strand, within GFF2627at 152.324 kb on + strandat 152.324 kb on + strandat 152.554 kb on - strandat 152.594 kb on + strandat 152.758 kb on - strand, within GFF2628at 152.850 kb on + strand, within GFF2628at 152.902 kb on + strand, within GFF2628at 152.924 kb on - strand, within GFF2628at 153.024 kb on + strand, within GFF2628at 153.025 kb on - strand, within GFF2628at 153.064 kb on - strand, within GFF2628at 153.096 kb on - strand, within GFF2628

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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150,761 - GFF2625 0.57 +0.5
150,978 + +0.3
151,263 + GFF2626 0.43 +0.3
151,264 - GFF2626 0.43 -0.3
151,307 + GFF2626 0.49 +0.1
151,341 + GFF2626 0.54 +0.6
151,557 - GFF2626 0.83 -0.9
152,098 + GFF2627 0.62 -1.2
152,279 + GFF2627 0.88 -1.1
152,324 + +0.0
152,324 + -0.4
152,554 - -0.7
152,594 + -0.7
152,758 - GFF2628 0.17 +0.2
152,850 + GFF2628 0.23 +0.3
152,902 + GFF2628 0.26 +0.1
152,924 - GFF2628 0.28 +1.0
153,024 + GFF2628 0.34 -0.3
153,025 - GFF2628 0.34 +0.3
153,064 - GFF2628 0.37 +0.0
153,096 - GFF2628 0.39 +0.5

Or see this region's nucleotide sequence