Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2187

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2186 and GFF2187 are separated by 3 nucleotidesGFF2187 and GFF2188 are separated by 573 nucleotides GFF2186 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 32,563 to 33,690 GFF2186 GFF2187 - FIG138056: a glutathione-dependent thiol reductase, at 33,694 to 34,050 GFF2187 GFF2188 - RND efflux system, inner membrane transporter CmeB, at 34,624 to 37,737 GFF2188 Position (kb) 33 34 35Strain fitness (log2 ratio) -1 0 1at 33.720 kb on - strandat 33.921 kb on + strand, within GFF2187at 33.940 kb on + strand, within GFF2187at 34.322 kb on - strandat 34.416 kb on + strandat 34.428 kb on + strandat 34.437 kb on + strandat 34.789 kb on + strandat 34.967 kb on + strand, within GFF2188

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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33,720 - -0.2
33,921 + GFF2187 0.64 -0.8
33,940 + GFF2187 0.69 -1.0
34,322 - -0.2
34,416 + +0.3
34,428 + -0.2
34,437 + -0.4
34,789 + -1.4
34,967 + GFF2188 0.11 -0.2

Or see this region's nucleotide sequence