Strain Fitness in Pseudomonas putida KT2440 around PP_0347

Experiment: Ferulic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0345 and PP_0346 overlap by 4 nucleotidesPP_0346 and PP_0347 overlap by 1 nucleotidesPP_0347 and PP_0348 are separated by 17 nucleotides PP_0345: PP_0345 - putative Heptose kinase WapP, at 418,218 to 418,952 _0345 PP_0346: PP_0346 - putative Heptose kinase WapQ, at 418,949 to 419,701 _0346 PP_0347: PP_0347 - conserved protein of unknown function, at 419,701 to 421,143 _0347 PP_0348: PP_0348 - conserved protein of unknown function, at 421,161 to 423,947 _0348 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 418.732 kb on + strand, within PP_0345at 418.872 kb on + strand, within PP_0345at 418.872 kb on + strand, within PP_0345at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.114 kb on + strandat 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.135 kb on + strand, within PP_0346at 419.146 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.599 kb on + strand, within PP_0346at 419.599 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346at 421.231 kb on - strandat 421.312 kb on + strandat 421.312 kb on + strandat 421.313 kb on - strandat 421.323 kb on + strandat 421.323 kb on + strandat 421.324 kb on - strandat 421.369 kb on + strandat 421.369 kb on + strandat 421.370 kb on - strandat 421.437 kb on + strandat 421.437 kb on + strandat 421.438 kb on - strandat 421.438 kb on - strandat 421.441 kb on + strand, within PP_0348at 421.442 kb on - strand, within PP_0348at 421.442 kb on - strand, within PP_0348at 421.456 kb on - strand, within PP_0348at 421.484 kb on - strand, within PP_0348at 421.549 kb on + strand, within PP_0348at 421.550 kb on - strand, within PP_0348at 421.609 kb on + strand, within PP_0348at 421.610 kb on - strand, within PP_0348at 421.610 kb on - strand, within PP_0348at 421.675 kb on + strand, within PP_0348at 421.675 kb on + strand, within PP_0348at 421.676 kb on - strand, within PP_0348at 421.676 kb on - strandat 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.677 kb on + strand, within PP_0348at 421.678 kb on - strand, within PP_0348at 421.678 kb on - strand, within PP_0348at 421.678 kb on - strand, within PP_0348at 421.690 kb on + strand, within PP_0348at 421.691 kb on - strand, within PP_0348at 421.691 kb on - strand, within PP_0348at 421.694 kb on + strand, within PP_0348at 421.695 kb on - strand, within PP_0348at 421.701 kb on + strand, within PP_0348at 421.702 kb on - strand, within PP_0348at 421.797 kb on + strand, within PP_0348at 421.797 kb on + strand, within PP_0348at 421.823 kb on + strand, within PP_0348at 421.823 kb on + strand, within PP_0348at 421.844 kb on + strand, within PP_0348at 421.855 kb on + strand, within PP_0348at 421.856 kb on - strand, within PP_0348at 421.916 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.089 kb on + strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.090 kb on - strand, within PP_0348at 422.093 kb on - strand, within PP_0348at 422.093 kb on - strand, within PP_0348

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferulic Acid (C)
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418,732 + PP_0345 0.70 -1.4
418,872 + PP_0345 0.89 -0.1
418,872 + PP_0345 0.89 -0.3
419,111 + PP_0346 0.22 -1.4
419,111 + PP_0346 0.22 -3.1
419,111 + PP_0346 0.22 -1.2
419,111 + PP_0346 0.22 -3.8
419,114 + +0.2
419,114 + PP_0346 0.22 -3.2
419,114 + PP_0346 0.22 -1.9
419,114 + PP_0346 0.22 -2.2
419,114 + PP_0346 0.22 -2.3
419,135 + PP_0346 0.25 -4.0
419,146 + PP_0346 0.26 -3.0
419,595 + PP_0346 0.86 -2.9
419,595 + PP_0346 0.86 -0.9
419,595 + PP_0346 0.86 -2.6
419,595 + PP_0346 0.86 -3.4
419,595 + PP_0346 0.86 -3.3
419,595 + PP_0346 0.86 -4.2
419,595 + PP_0346 0.86 -2.7
419,599 + PP_0346 0.86 -2.1
419,599 + PP_0346 0.86 -3.2
419,615 + PP_0346 0.88 -4.0
419,615 + PP_0346 0.88 -3.6
419,615 + PP_0346 0.88 -4.0
421,231 - +0.7
421,312 + -0.5
421,312 + +0.6
421,313 - +1.1
421,323 + +0.1
421,323 + +0.3
421,324 - +0.2
421,369 + +1.5
421,369 + -0.7
421,370 - +0.8
421,437 + +1.5
421,437 + -0.1
421,438 - +1.3
421,438 - -0.4
421,441 + PP_0348 0.10 +0.2
421,442 - PP_0348 0.10 +1.3
421,442 - PP_0348 0.10 +0.1
421,456 - PP_0348 0.11 +0.2
421,484 - PP_0348 0.12 -0.1
421,549 + PP_0348 0.14 +0.2
421,550 - PP_0348 0.14 +0.1
421,609 + PP_0348 0.16 -0.3
421,610 - PP_0348 0.16 +0.5
421,610 - PP_0348 0.16 -0.3
421,675 + PP_0348 0.18 -0.9
421,675 + PP_0348 0.18 +0.5
421,676 - PP_0348 0.18 -0.5
421,676 - +2.5
421,677 + PP_0348 0.19 +0.7
421,677 + PP_0348 0.19 -0.2
421,677 + PP_0348 0.19 -0.2
421,677 + PP_0348 0.19 -1.1
421,677 + PP_0348 0.19 -0.0
421,677 + PP_0348 0.19 +0.6
421,678 - PP_0348 0.19 +0.3
421,678 - PP_0348 0.19 +0.0
421,678 - PP_0348 0.19 +0.2
421,690 + PP_0348 0.19 -0.4
421,691 - PP_0348 0.19 -0.8
421,691 - PP_0348 0.19 +0.6
421,694 + PP_0348 0.19 -0.5
421,695 - PP_0348 0.19 -1.9
421,701 + PP_0348 0.19 -0.0
421,702 - PP_0348 0.19 +1.0
421,797 + PP_0348 0.23 +0.6
421,797 + PP_0348 0.23 +0.2
421,823 + PP_0348 0.24 +0.4
421,823 + PP_0348 0.24 +1.0
421,844 + PP_0348 0.25 -0.3
421,855 + PP_0348 0.25 +0.1
421,856 - PP_0348 0.25 -0.3
421,916 + PP_0348 0.27 -1.1
422,089 + PP_0348 0.33 +0.4
422,089 + PP_0348 0.33 -0.1
422,089 + PP_0348 0.33 -0.7
422,089 + PP_0348 0.33 +0.1
422,089 + PP_0348 0.33 +0.2
422,090 - PP_0348 0.33 +2.1
422,090 - PP_0348 0.33 +0.4
422,090 - PP_0348 0.33 +0.2
422,090 - PP_0348 0.33 +0.6
422,090 - PP_0348 0.33 -1.1
422,093 - PP_0348 0.33 +0.6
422,093 - PP_0348 0.33 -1.7

Or see this region's nucleotide sequence