Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF766 and GFF767 overlap by 4 nucleotides GFF767 and GFF768 are separated by 105 nucleotides GFF768 and GFF769 are separated by 236 nucleotides GFF769 and GFF770 overlap by 1 nucleotides
GFF766 - Choline-sulfatase (EC 3.1.6.6), at 123,293 to 124,780
GFF766
GFF767 - hypothetical protein, at 124,777 to 124,893
GFF767
GFF768 - Arginine ABC transporter, periplasmic arginine-binding protein ArtJ, at 124,999 to 125,730
GFF768
GFF769 - Arginine ABC transporter, permease protein ArtM, at 125,967 to 126,635
GFF769
GFF770 - Arginine ABC transporter, permease protein ArtQ, at 126,635 to 127,351
GFF770
Position (kb)
124
125
126 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 124.007 kb on - strand, within GFF766 at 124.060 kb on + strand, within GFF766 at 124.061 kb on - strand, within GFF766 at 124.099 kb on + strand, within GFF766 at 124.181 kb on - strand, within GFF766 at 124.196 kb on - strand, within GFF766 at 124.424 kb on + strand, within GFF766 at 124.431 kb on - strand, within GFF766 at 124.431 kb on - strand, within GFF766 at 124.475 kb on + strand, within GFF766 at 124.561 kb on + strand, within GFF766 at 124.669 kb on + strand at 124.707 kb on + strand at 124.707 kb on + strand at 124.707 kb on + strand at 124.708 kb on - strand at 124.708 kb on - strand at 124.798 kb on - strand, within GFF767 at 124.831 kb on - strand, within GFF767 at 124.957 kb on + strand at 124.957 kb on + strand at 124.958 kb on - strand at 124.960 kb on - strand at 124.993 kb on + strand at 124.994 kb on - strand at 124.994 kb on - strand at 125.091 kb on + strand, within GFF768 at 125.133 kb on - strand, within GFF768 at 125.229 kb on + strand, within GFF768 at 125.360 kb on - strand, within GFF768 at 125.420 kb on + strand, within GFF768 at 125.430 kb on + strand, within GFF768 at 125.514 kb on + strand, within GFF768 at 125.544 kb on + strand, within GFF768 at 125.570 kb on - strand, within GFF768 at 125.757 kb on - strand at 125.888 kb on - strand at 125.968 kb on + strand at 126.069 kb on + strand, within GFF769 at 126.137 kb on + strand, within GFF769 at 126.140 kb on - strand, within GFF769 at 126.140 kb on - strand, within GFF769 at 126.153 kb on - strand, within GFF769 at 126.169 kb on - strand, within GFF769 at 126.179 kb on + strand, within GFF769 at 126.185 kb on - strand, within GFF769 at 126.233 kb on + strand, within GFF769 at 126.304 kb on + strand, within GFF769 at 126.398 kb on - strand, within GFF769 at 126.519 kb on + strand, within GFF769 at 126.520 kb on - strand, within GFF769 at 126.570 kb on - strand at 126.637 kb on - strand at 126.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 124,007 - GFF766 0.48 -0.8 124,060 + GFF766 0.52 -0.2 124,061 - GFF766 0.52 -2.0 124,099 + GFF766 0.54 +0.3 124,181 - GFF766 0.60 -3.3 124,196 - GFF766 0.61 +0.5 124,424 + GFF766 0.76 -0.1 124,431 - GFF766 0.76 +0.3 124,431 - GFF766 0.76 -2.3 124,475 + GFF766 0.79 -0.2 124,561 + GFF766 0.85 -0.1 124,669 + -0.6 124,707 + +0.4 124,707 + +0.0 124,707 + +0.3 124,708 - -1.0 124,708 - -0.2 124,798 - GFF767 0.18 -1.8 124,831 - GFF767 0.46 +0.6 124,957 + -1.5 124,957 + -0.2 124,958 - -0.9 124,960 - -0.6 124,993 + +0.8 124,994 - -0.1 124,994 - +0.0 125,091 + GFF768 0.13 -0.1 125,133 - GFF768 0.18 +0.1 125,229 + GFF768 0.31 -1.0 125,360 - GFF768 0.49 +0.3 125,420 + GFF768 0.58 -0.1 125,430 + GFF768 0.59 -1.5 125,514 + GFF768 0.70 -0.5 125,544 + GFF768 0.74 +0.1 125,570 - GFF768 0.78 -2.1 125,757 - -0.8 125,888 - +0.0 125,968 + +0.2 126,069 + GFF769 0.15 -0.6 126,137 + GFF769 0.25 +0.5 126,140 - GFF769 0.26 +0.5 126,140 - GFF769 0.26 -0.0 126,153 - GFF769 0.28 +0.5 126,169 - GFF769 0.30 +0.5 126,179 + GFF769 0.32 -0.3 126,185 - GFF769 0.33 +0.1 126,233 + GFF769 0.40 -1.5 126,304 + GFF769 0.50 -0.4 126,398 - GFF769 0.64 +0.9 126,519 + GFF769 0.83 -2.0 126,520 - GFF769 0.83 -0.2 126,570 - -0.2 126,637 - -0.9 126,674 + -1.4
Or see this region's nucleotide sequence