Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF768

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF766 and GFF767 overlap by 4 nucleotidesGFF767 and GFF768 are separated by 105 nucleotidesGFF768 and GFF769 are separated by 236 nucleotidesGFF769 and GFF770 overlap by 1 nucleotides GFF766 - Choline-sulfatase (EC 3.1.6.6), at 123,293 to 124,780 GFF766 GFF767 - hypothetical protein, at 124,777 to 124,893 GFF767 GFF768 - Arginine ABC transporter, periplasmic arginine-binding protein ArtJ, at 124,999 to 125,730 GFF768 GFF769 - Arginine ABC transporter, permease protein ArtM, at 125,967 to 126,635 GFF769 GFF770 - Arginine ABC transporter, permease protein ArtQ, at 126,635 to 127,351 GFF770 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 124.007 kb on - strand, within GFF766at 124.060 kb on + strand, within GFF766at 124.061 kb on - strand, within GFF766at 124.099 kb on + strand, within GFF766at 124.181 kb on - strand, within GFF766at 124.196 kb on - strand, within GFF766at 124.424 kb on + strand, within GFF766at 124.431 kb on - strand, within GFF766at 124.431 kb on - strand, within GFF766at 124.475 kb on + strand, within GFF766at 124.561 kb on + strand, within GFF766at 124.669 kb on + strandat 124.707 kb on + strandat 124.707 kb on + strandat 124.707 kb on + strandat 124.708 kb on - strandat 124.708 kb on - strandat 124.798 kb on - strand, within GFF767at 124.831 kb on - strand, within GFF767at 124.957 kb on + strandat 124.957 kb on + strandat 124.958 kb on - strandat 124.960 kb on - strandat 124.993 kb on + strandat 124.994 kb on - strandat 124.994 kb on - strandat 125.091 kb on + strand, within GFF768at 125.133 kb on - strand, within GFF768at 125.229 kb on + strand, within GFF768at 125.360 kb on - strand, within GFF768at 125.420 kb on + strand, within GFF768at 125.430 kb on + strand, within GFF768at 125.514 kb on + strand, within GFF768at 125.544 kb on + strand, within GFF768at 125.570 kb on - strand, within GFF768at 125.757 kb on - strandat 125.888 kb on - strandat 125.968 kb on + strandat 126.069 kb on + strand, within GFF769at 126.137 kb on + strand, within GFF769at 126.140 kb on - strand, within GFF769at 126.140 kb on - strand, within GFF769at 126.153 kb on - strand, within GFF769at 126.169 kb on - strand, within GFF769at 126.179 kb on + strand, within GFF769at 126.185 kb on - strand, within GFF769at 126.233 kb on + strand, within GFF769at 126.304 kb on + strand, within GFF769at 126.398 kb on - strand, within GFF769at 126.519 kb on + strand, within GFF769at 126.520 kb on - strand, within GFF769at 126.570 kb on - strandat 126.637 kb on - strandat 126.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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124,007 - GFF766 0.48 -0.8
124,060 + GFF766 0.52 -0.2
124,061 - GFF766 0.52 -2.0
124,099 + GFF766 0.54 +0.3
124,181 - GFF766 0.60 -3.3
124,196 - GFF766 0.61 +0.5
124,424 + GFF766 0.76 -0.1
124,431 - GFF766 0.76 +0.3
124,431 - GFF766 0.76 -2.3
124,475 + GFF766 0.79 -0.2
124,561 + GFF766 0.85 -0.1
124,669 + -0.6
124,707 + +0.4
124,707 + +0.0
124,707 + +0.3
124,708 - -1.0
124,708 - -0.2
124,798 - GFF767 0.18 -1.8
124,831 - GFF767 0.46 +0.6
124,957 + -1.5
124,957 + -0.2
124,958 - -0.9
124,960 - -0.6
124,993 + +0.8
124,994 - -0.1
124,994 - +0.0
125,091 + GFF768 0.13 -0.1
125,133 - GFF768 0.18 +0.1
125,229 + GFF768 0.31 -1.0
125,360 - GFF768 0.49 +0.3
125,420 + GFF768 0.58 -0.1
125,430 + GFF768 0.59 -1.5
125,514 + GFF768 0.70 -0.5
125,544 + GFF768 0.74 +0.1
125,570 - GFF768 0.78 -2.1
125,757 - -0.8
125,888 - +0.0
125,968 + +0.2
126,069 + GFF769 0.15 -0.6
126,137 + GFF769 0.25 +0.5
126,140 - GFF769 0.26 +0.5
126,140 - GFF769 0.26 -0.0
126,153 - GFF769 0.28 +0.5
126,169 - GFF769 0.30 +0.5
126,179 + GFF769 0.32 -0.3
126,185 - GFF769 0.33 +0.1
126,233 + GFF769 0.40 -1.5
126,304 + GFF769 0.50 -0.4
126,398 - GFF769 0.64 +0.9
126,519 + GFF769 0.83 -2.0
126,520 - GFF769 0.83 -0.2
126,570 - -0.2
126,637 - -0.9
126,674 + -1.4

Or see this region's nucleotide sequence