Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF676 and GFF677 are separated by 91 nucleotides GFF677 and GFF678 are separated by 396 nucleotides
GFF676 - invasion plasmid antigen / internalin, putative, at 34,008 to 36,305
GFF676
GFF677 - Putative structural protein, at 36,397 to 37,305
GFF677
GFF678 - Molybdenum cofactor biosynthesis protein MoaA, at 37,702 to 38,691
GFF678
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 35.512 kb on - strand, within GFF676 at 35.599 kb on + strand, within GFF676 at 35.667 kb on + strand, within GFF676 at 36.018 kb on - strand, within GFF676 at 36.165 kb on - strand at 36.165 kb on - strand at 36.255 kb on - strand at 36.399 kb on - strand at 36.399 kb on - strand at 36.432 kb on + strand at 36.437 kb on - strand at 36.439 kb on + strand at 36.568 kb on - strand, within GFF677 at 36.569 kb on + strand, within GFF677 at 36.569 kb on + strand, within GFF677 at 36.570 kb on - strand, within GFF677 at 36.570 kb on - strand, within GFF677 at 37.185 kb on + strand, within GFF677 at 37.213 kb on + strand, within GFF677 at 37.214 kb on - strand, within GFF677 at 37.214 kb on - strand, within GFF677 at 37.244 kb on - strand at 37.368 kb on - strand at 37.368 kb on - strand at 37.390 kb on + strand at 37.445 kb on - strand at 37.445 kb on - strand at 37.447 kb on - strand at 37.447 kb on - strand at 37.551 kb on + strand at 37.552 kb on - strand at 37.570 kb on - strand at 37.588 kb on - strand at 37.640 kb on + strand at 37.699 kb on + strand at 37.699 kb on + strand at 37.700 kb on - strand at 37.742 kb on - strand at 37.742 kb on - strand at 37.744 kb on + strand at 37.773 kb on + strand at 37.929 kb on - strand, within GFF678 at 37.978 kb on - strand, within GFF678
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 35,512 - GFF676 0.65 -0.1 35,599 + GFF676 0.69 -0.2 35,667 + GFF676 0.72 +0.4 36,018 - GFF676 0.87 +0.1 36,165 - -0.3 36,165 - -0.1 36,255 - -0.7 36,399 - +0.1 36,399 - -0.2 36,432 + +0.1 36,437 - -0.6 36,439 + -0.8 36,568 - GFF677 0.19 +0.8 36,569 + GFF677 0.19 -0.0 36,569 + GFF677 0.19 +1.3 36,570 - GFF677 0.19 +0.4 36,570 - GFF677 0.19 +0.2 37,185 + GFF677 0.87 +0.5 37,213 + GFF677 0.90 -2.8 37,214 - GFF677 0.90 +0.6 37,214 - GFF677 0.90 -0.3 37,244 - -0.5 37,368 - -0.0 37,368 - -0.3 37,390 + +0.6 37,445 - +0.6 37,445 - +0.2 37,447 - +0.1 37,447 - -0.2 37,551 + +0.6 37,552 - -0.2 37,570 - -0.1 37,588 - -0.2 37,640 + -1.0 37,699 + -1.0 37,699 + +0.4 37,700 - +0.4 37,742 - +0.4 37,742 - +0.4 37,744 + +0.7 37,773 + +0.4 37,929 - GFF678 0.23 +1.0 37,978 - GFF678 0.28 +1.7
Or see this region's nucleotide sequence