Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF654 and GFF655 are separated by 67 nucleotides GFF655 and GFF656 are separated by 128 nucleotides GFF656 and GFF657 are separated by 166 nucleotides
GFF654 - Putative molybdenum transport ATP-binding protein modF, at 9,963 to 11,438
GFF654
GFF655 - DNA-binding domain of ModE / Molybdate-binding domain of ModE, at 11,506 to 12,294
GFF655
GFF656 - Putative exported protein, at 12,423 to 12,572
GFF656
GFF657 - Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1), at 12,739 to 13,512
GFF657
Position (kb)
11
12
13 Strain fitness (log2 ratio)
-1
0
1 at 10.520 kb on + strand, within GFF654 at 10.529 kb on + strand, within GFF654 at 10.557 kb on - strand, within GFF654 at 10.602 kb on + strand, within GFF654 at 10.603 kb on - strand, within GFF654 at 10.630 kb on + strand, within GFF654 at 10.649 kb on + strand, within GFF654 at 10.720 kb on - strand, within GFF654 at 10.805 kb on + strand, within GFF654 at 10.805 kb on + strand, within GFF654 at 10.972 kb on - strand, within GFF654 at 10.972 kb on - strand, within GFF654 at 11.036 kb on - strand, within GFF654 at 11.183 kb on + strand, within GFF654 at 11.183 kb on + strand, within GFF654 at 11.184 kb on - strand, within GFF654 at 11.184 kb on - strand, within GFF654 at 11.238 kb on - strand, within GFF654 at 11.573 kb on - strand at 12.029 kb on + strand, within GFF655 at 12.111 kb on + strand, within GFF655 at 12.111 kb on + strand, within GFF655 at 12.112 kb on - strand, within GFF655 at 12.112 kb on - strand, within GFF655 at 12.159 kb on + strand, within GFF655 at 12.160 kb on - strand, within GFF655 at 12.162 kb on - strand, within GFF655 at 12.231 kb on + strand at 12.232 kb on - strand at 12.394 kb on + strand at 12.407 kb on - strand at 12.409 kb on - strand at 12.649 kb on - strand at 12.735 kb on - strand at 12.831 kb on - strand, within GFF657 at 12.947 kb on + strand, within GFF657 at 13.104 kb on + strand, within GFF657
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 10,520 + GFF654 0.38 +1.0 10,529 + GFF654 0.38 +1.0 10,557 - GFF654 0.40 +0.4 10,602 + GFF654 0.43 +0.6 10,603 - GFF654 0.43 +0.5 10,630 + GFF654 0.45 +1.0 10,649 + GFF654 0.46 +0.0 10,720 - GFF654 0.51 -0.9 10,805 + GFF654 0.57 +0.8 10,805 + GFF654 0.57 -0.8 10,972 - GFF654 0.68 -0.4 10,972 - GFF654 0.68 -0.1 11,036 - GFF654 0.73 +1.2 11,183 + GFF654 0.83 -1.6 11,183 + GFF654 0.83 +0.7 11,184 - GFF654 0.83 -1.1 11,184 - GFF654 0.83 -0.6 11,238 - GFF654 0.86 -0.0 11,573 - +0.2 12,029 + GFF655 0.66 +0.1 12,111 + GFF655 0.77 -0.0 12,111 + GFF655 0.77 +1.3 12,112 - GFF655 0.77 +1.2 12,112 - GFF655 0.77 -0.7 12,159 + GFF655 0.83 +0.5 12,160 - GFF655 0.83 +0.6 12,162 - GFF655 0.83 +0.3 12,231 + -0.6 12,232 - +0.3 12,394 + +0.5 12,407 - -0.1 12,409 - -0.4 12,649 - +0.2 12,735 - +0.2 12,831 - GFF657 0.12 -1.0 12,947 + GFF657 0.27 -0.4 13,104 + GFF657 0.47 +0.1
Or see this region's nucleotide sequence