Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF591 and GFF592 are separated by 74 nucleotides GFF592 and GFF593 overlap by 8 nucleotides GFF593 and GFF594 are separated by 32 nucleotides GFF594 and GFF595 are separated by 344 nucleotides
GFF591 - Transcriptional regulatory protein RtcR, at 326,628 to 328,211
GFF591
GFF592 - hypothetical protein, at 328,286 to 328,408
GFF592
GFF593 - Putative ribonucleoprotein related-protein, at 328,401 to 329,954
GFF593
GFF594 - Putative ribonucleoprotein related-protein, at 329,987 to 330,154
GFF594
GFF595 - 'RNA-2',3'-PO4:RNA-5'-OH ligase' transl_table=11, at 330,499 to 331,716
GFF595
Position (kb) 328
329
330 Strain fitness (log2 ratio) -1
0
1 at 327.519 kb on + strand, within GFF591 at 327.526 kb on + strand, within GFF591 at 327.527 kb on - strand, within GFF591 at 327.527 kb on - strand, within GFF591 at 327.598 kb on - strand, within GFF591 at 327.764 kb on + strand, within GFF591 at 327.820 kb on + strand, within GFF591 at 327.889 kb on + strand, within GFF591 at 327.947 kb on - strand, within GFF591 at 328.070 kb on - strand at 328.407 kb on - strand at 328.549 kb on - strand at 328.720 kb on + strand, within GFF593 at 328.721 kb on - strand, within GFF593 at 328.721 kb on - strand, within GFF593 at 328.758 kb on - strand, within GFF593 at 328.985 kb on + strand, within GFF593 at 329.159 kb on + strand, within GFF593 at 329.642 kb on + strand, within GFF593 at 329.643 kb on - strand, within GFF593 at 329.682 kb on - strand, within GFF593 at 329.682 kb on - strand, within GFF593 at 329.711 kb on + strand, within GFF593 at 329.808 kb on + strand at 329.840 kb on + strand at 329.841 kb on - strand at 329.876 kb on + strand at 329.884 kb on + strand at 329.884 kb on + strand at 329.885 kb on - strand at 329.888 kb on + strand at 329.908 kb on - strand at 329.953 kb on - strand at 329.953 kb on - strand at 329.953 kb on - strand at 329.953 kb on - strand at 329.959 kb on + strand at 329.960 kb on - strand at 330.152 kb on + strand at 330.209 kb on - strand at 330.266 kb on - strand at 330.275 kb on - strand at 330.348 kb on - strand at 330.389 kb on + strand at 330.389 kb on + strand at 330.460 kb on + strand at 330.515 kb on + strand at 330.515 kb on + strand at 330.809 kb on + strand, within GFF595
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 327,519 + GFF591 0.56 -0.9 327,526 + GFF591 0.57 +0.1 327,527 - GFF591 0.57 +0.1 327,527 - GFF591 0.57 +0.6 327,598 - GFF591 0.61 +0.2 327,764 + GFF591 0.72 +0.1 327,820 + GFF591 0.75 -0.3 327,889 + GFF591 0.80 +0.8 327,947 - GFF591 0.83 +0.4 328,070 - -0.0 328,407 - +0.9 328,549 - +0.0 328,720 + GFF593 0.21 +0.3 328,721 - GFF593 0.21 +0.2 328,721 - GFF593 0.21 +0.5 328,758 - GFF593 0.23 +0.1 328,985 + GFF593 0.38 +0.2 329,159 + GFF593 0.49 -0.1 329,642 + GFF593 0.80 +0.7 329,643 - GFF593 0.80 +0.1 329,682 - GFF593 0.82 -0.3 329,682 - GFF593 0.82 +0.2 329,711 + GFF593 0.84 +0.1 329,808 + -0.4 329,840 + -0.6 329,841 - +0.6 329,876 + -0.0 329,884 + +0.3 329,884 + -0.4 329,885 - +0.2 329,888 + +1.1 329,908 - -0.9 329,953 - +0.0 329,953 - +1.1 329,953 - -0.2 329,953 - +0.7 329,959 + -0.3 329,960 - +0.0 330,152 + +0.0 330,209 - -1.1 330,266 - -1.0 330,275 - +0.5 330,348 - -0.7 330,389 + +0.5 330,389 + +0.8 330,460 + +0.1 330,515 + +0.1 330,515 + -0.0 330,809 + GFF595 0.25 -0.6
Or see this region's nucleotide sequence