Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF589 and GFF590 are separated by 93 nucleotides GFF590 and GFF591 overlap by 4 nucleotides GFF591 and GFF592 are separated by 74 nucleotides GFF592 and GFF593 overlap by 8 nucleotides
GFF589 - GlpG protein (membrane protein of glp regulon), at 324,949 to 325,779
GFF589
GFF590 - Glycerol-3-phosphate regulon repressor, DeoR family, at 325,873 to 326,631
GFF590
GFF591 - Transcriptional regulatory protein RtcR, at 326,628 to 328,211
GFF591
GFF592 - hypothetical protein, at 328,286 to 328,408
GFF592
GFF593 - Putative ribonucleoprotein related-protein, at 328,401 to 329,954
GFF593
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -2
-1
0
1 at 325.692 kb on + strand, within GFF589 at 325.927 kb on + strand at 326.160 kb on + strand, within GFF590 at 326.350 kb on - strand, within GFF590 at 326.388 kb on + strand, within GFF590 at 326.400 kb on + strand, within GFF590 at 326.428 kb on + strand, within GFF590 at 326.522 kb on + strand, within GFF590 at 326.538 kb on + strand, within GFF590 at 326.539 kb on - strand, within GFF590 at 326.557 kb on + strand at 326.610 kb on + strand at 326.675 kb on + strand at 326.799 kb on - strand, within GFF591 at 326.876 kb on + strand, within GFF591 at 326.877 kb on - strand, within GFF591 at 326.879 kb on - strand, within GFF591 at 326.982 kb on - strand, within GFF591 at 327.111 kb on - strand, within GFF591 at 327.519 kb on + strand, within GFF591 at 327.526 kb on + strand, within GFF591 at 327.527 kb on - strand, within GFF591 at 327.527 kb on - strand, within GFF591 at 327.598 kb on - strand, within GFF591 at 327.764 kb on + strand, within GFF591 at 327.820 kb on + strand, within GFF591 at 327.889 kb on + strand, within GFF591 at 327.947 kb on - strand, within GFF591 at 328.070 kb on - strand at 328.407 kb on - strand at 328.549 kb on - strand at 328.720 kb on + strand, within GFF593 at 328.721 kb on - strand, within GFF593 at 328.721 kb on - strand, within GFF593 at 328.758 kb on - strand, within GFF593 at 328.985 kb on + strand, within GFF593 at 329.159 kb on + strand, within GFF593
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 325,692 + GFF589 0.89 +0.1 325,927 + +0.1 326,160 + GFF590 0.38 -0.0 326,350 - GFF590 0.63 -0.4 326,388 + GFF590 0.68 -0.1 326,400 + GFF590 0.69 -0.9 326,428 + GFF590 0.73 -1.7 326,522 + GFF590 0.86 -1.3 326,538 + GFF590 0.88 +0.1 326,539 - GFF590 0.88 +0.2 326,557 + -0.2 326,610 + -2.4 326,675 + -1.0 326,799 - GFF591 0.11 +0.3 326,876 + GFF591 0.16 +0.9 326,877 - GFF591 0.16 +0.4 326,879 - GFF591 0.16 +0.1 326,982 - GFF591 0.22 +0.1 327,111 - GFF591 0.30 +0.5 327,519 + GFF591 0.56 -0.9 327,526 + GFF591 0.57 +0.1 327,527 - GFF591 0.57 +0.1 327,527 - GFF591 0.57 +0.6 327,598 - GFF591 0.61 +0.2 327,764 + GFF591 0.72 +0.1 327,820 + GFF591 0.75 -0.3 327,889 + GFF591 0.80 +0.8 327,947 - GFF591 0.83 +0.4 328,070 - -0.0 328,407 - +0.9 328,549 - +0.0 328,720 + GFF593 0.21 +0.3 328,721 - GFF593 0.21 +0.2 328,721 - GFF593 0.21 +0.5 328,758 - GFF593 0.23 +0.1 328,985 + GFF593 0.38 +0.2 329,159 + GFF593 0.49 -0.1
Or see this region's nucleotide sequence