Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4578

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4577 and GFF4578 are separated by 58 nucleotidesGFF4578 and GFF4579 are separated by 26 nucleotides GFF4577 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 363,450 to 364,496 GFF4577 GFF4578 - hypothetical protein, at 364,555 to 364,674 GFF4578 GFF4579 - tRNA-i(6)A37 methylthiotransferase, at 364,701 to 366,125 GFF4579 Position (kb) 364 365Strain fitness (log2 ratio) -2 -1 0 1 2at 363.796 kb on - strand, within GFF4577at 363.796 kb on - strand, within GFF4577at 363.991 kb on - strand, within GFF4577at 364.298 kb on - strand, within GFF4577at 364.489 kb on - strandat 364.845 kb on - strand, within GFF4579at 364.865 kb on + strand, within GFF4579at 364.865 kb on + strand, within GFF4579at 364.988 kb on + strand, within GFF4579at 365.021 kb on + strand, within GFF4579at 365.117 kb on + strand, within GFF4579at 365.117 kb on + strand, within GFF4579at 365.118 kb on - strand, within GFF4579at 365.153 kb on + strand, within GFF4579at 365.270 kb on - strand, within GFF4579at 365.372 kb on - strand, within GFF4579at 365.374 kb on - strand, within GFF4579at 365.381 kb on + strand, within GFF4579at 365.384 kb on + strand, within GFF4579at 365.478 kb on - strand, within GFF4579at 365.638 kb on + strand, within GFF4579at 365.639 kb on - strand, within GFF4579at 365.642 kb on + strand, within GFF4579at 365.651 kb on + strand, within GFF4579at 365.651 kb on + strand, within GFF4579

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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363,796 - GFF4577 0.33 +0.4
363,796 - GFF4577 0.33 +0.3
363,991 - GFF4577 0.52 +0.9
364,298 - GFF4577 0.81 +0.9
364,489 - -2.2
364,845 - GFF4579 0.10 +0.1
364,865 + GFF4579 0.12 +0.5
364,865 + GFF4579 0.12 -0.6
364,988 + GFF4579 0.20 +0.6
365,021 + GFF4579 0.22 -0.6
365,117 + GFF4579 0.29 -2.3
365,117 + GFF4579 0.29 -0.9
365,118 - GFF4579 0.29 +2.1
365,153 + GFF4579 0.32 -0.4
365,270 - GFF4579 0.40 -1.0
365,372 - GFF4579 0.47 -0.7
365,374 - GFF4579 0.47 +0.1
365,381 + GFF4579 0.48 +1.1
365,384 + GFF4579 0.48 -0.3
365,478 - GFF4579 0.55 +0.0
365,638 + GFF4579 0.66 -1.1
365,639 - GFF4579 0.66 -0.4
365,642 + GFF4579 0.66 +0.8
365,651 + GFF4579 0.67 -1.3
365,651 + GFF4579 0.67 -1.8

Or see this region's nucleotide sequence