Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF430 and GFF431 are separated by 11 nucleotides GFF431 and GFF432 are separated by 2 nucleotides GFF432 and GFF433 are separated by 138 nucleotides
GFF430 - 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor, at 152,119 to 153,105
GFF430
GFF431 - 2,3-diketo-L-gulonate TRAP transporter large permease protein yiaN, at 153,117 to 154,394
GFF431
GFF432 - 2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM, at 154,397 to 154,870
GFF432
GFF433 - Putative chemotaxis protein, resembles cheA, at 155,009 to 155,941
GFF433
Position (kb) 153
154
155 Strain fitness (log2 ratio) -1
0
1 at 152.121 kb on - strand at 152.121 kb on - strand at 152.121 kb on - strand at 152.121 kb on - strand at 152.121 kb on - strand at 152.182 kb on - strand at 152.309 kb on + strand, within GFF430 at 152.382 kb on + strand, within GFF430 at 152.433 kb on - strand, within GFF430 at 152.433 kb on - strand, within GFF430 at 152.441 kb on - strand, within GFF430 at 152.475 kb on + strand, within GFF430 at 152.475 kb on + strand, within GFF430 at 152.476 kb on - strand, within GFF430 at 152.565 kb on + strand, within GFF430 at 152.797 kb on + strand, within GFF430 at 152.797 kb on + strand, within GFF430 at 152.798 kb on - strand, within GFF430 at 152.798 kb on - strand, within GFF430 at 153.305 kb on + strand, within GFF431 at 153.367 kb on - strand, within GFF431 at 153.370 kb on - strand, within GFF431 at 153.377 kb on + strand, within GFF431 at 153.451 kb on - strand, within GFF431 at 153.504 kb on + strand, within GFF431 at 153.632 kb on + strand, within GFF431 at 153.839 kb on + strand, within GFF431 at 153.926 kb on + strand, within GFF431 at 153.927 kb on - strand, within GFF431 at 153.948 kb on - strand, within GFF431 at 154.004 kb on - strand, within GFF431 at 154.228 kb on - strand, within GFF431 at 154.287 kb on - strand at 154.342 kb on - strand at 154.380 kb on + strand at 154.381 kb on - strand at 154.399 kb on - strand at 154.443 kb on - strand at 154.504 kb on + strand, within GFF432 at 154.505 kb on - strand, within GFF432 at 154.506 kb on + strand, within GFF432 at 154.507 kb on - strand, within GFF432 at 154.507 kb on - strand, within GFF432 at 154.507 kb on - strand, within GFF432 at 154.586 kb on + strand, within GFF432 at 154.808 kb on - strand, within GFF432 at 155.230 kb on - strand, within GFF433 at 155.320 kb on + strand, within GFF433 at 155.353 kb on + strand, within GFF433 at 155.366 kb on + strand, within GFF433 at 155.366 kb on + strand, within GFF433 at 155.367 kb on - strand, within GFF433 at 155.367 kb on - strand, within GFF433 at 155.383 kb on + strand, within GFF433
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 152,121 - +0.1 152,121 - +0.3 152,121 - +0.6 152,121 - +0.4 152,121 - -0.8 152,182 - +0.2 152,309 + GFF430 0.19 -0.9 152,382 + GFF430 0.27 -0.2 152,433 - GFF430 0.32 -0.3 152,433 - GFF430 0.32 -0.3 152,441 - GFF430 0.33 -0.3 152,475 + GFF430 0.36 +0.3 152,475 + GFF430 0.36 -1.1 152,476 - GFF430 0.36 -1.3 152,565 + GFF430 0.45 -1.3 152,797 + GFF430 0.69 +0.2 152,797 + GFF430 0.69 -0.1 152,798 - GFF430 0.69 -0.1 152,798 - GFF430 0.69 -0.2 153,305 + GFF431 0.15 -0.9 153,367 - GFF431 0.20 -0.7 153,370 - GFF431 0.20 -0.5 153,377 + GFF431 0.20 +0.3 153,451 - GFF431 0.26 -0.2 153,504 + GFF431 0.30 -0.2 153,632 + GFF431 0.40 -0.0 153,839 + GFF431 0.56 -0.1 153,926 + GFF431 0.63 -0.8 153,927 - GFF431 0.63 +0.5 153,948 - GFF431 0.65 -0.0 154,004 - GFF431 0.69 +0.3 154,228 - GFF431 0.87 -0.2 154,287 - +0.3 154,342 - +0.3 154,380 + +0.3 154,381 - +0.4 154,399 - +0.2 154,443 - +0.3 154,504 + GFF432 0.23 +0.1 154,505 - GFF432 0.23 -1.2 154,506 + GFF432 0.23 +0.2 154,507 - GFF432 0.23 -0.5 154,507 - GFF432 0.23 -0.6 154,507 - GFF432 0.23 +0.0 154,586 + GFF432 0.40 -0.4 154,808 - GFF432 0.87 +0.1 155,230 - GFF433 0.24 -0.2 155,320 + GFF433 0.33 +1.4 155,353 + GFF433 0.37 +0.3 155,366 + GFF433 0.38 +0.7 155,366 + GFF433 0.38 -0.2 155,367 - GFF433 0.38 +0.7 155,367 - GFF433 0.38 +0.0 155,383 + GFF433 0.40 +0.5
Or see this region's nucleotide sequence