Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4233

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4231 and GFF4232 overlap by 17 nucleotidesGFF4232 and GFF4233 are separated by 61 nucleotidesGFF4233 and GFF4234 are separated by 663 nucleotides GFF4231 - outer membrane fimbrial usher protein, at 11,247 to 13,808 GFF4231 GFF4232 - Putative fimbrial chaperone, at 13,792 to 14,553 GFF4232 GFF4233 - Fimbrial protein precursor, at 14,615 to 15,151 GFF4233 GFF4234 - Possible transmembrane regulator, at 15,815 to 16,549 GFF4234 Position (kb) 14 15 16Strain fitness (log2 ratio) -1 0 1at 13.622 kb on - strandat 13.664 kb on + strandat 13.720 kb on + strandat 13.756 kb on - strandat 13.767 kb on + strandat 13.768 kb on - strandat 13.811 kb on + strandat 13.823 kb on - strandat 13.985 kb on - strand, within GFF4232at 14.017 kb on - strand, within GFF4232at 14.616 kb on + strandat 14.617 kb on - strandat 14.697 kb on + strand, within GFF4233at 15.741 kb on + strandat 16.066 kb on - strand, within GFF4234

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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13,622 - -0.1
13,664 + -0.4
13,720 + -0.7
13,756 - +0.4
13,767 + -0.4
13,768 - -0.4
13,811 + -0.6
13,823 - -0.1
13,985 - GFF4232 0.25 +0.1
14,017 - GFF4232 0.30 -0.6
14,616 + -0.9
14,617 - -0.6
14,697 + GFF4233 0.15 +0.5
15,741 + +0.3
16,066 - GFF4234 0.34 +0.5

Or see this region's nucleotide sequence