Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3780

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3779 and GFF3780 are separated by 43 nucleotidesGFF3780 and GFF3781 are separated by 32 nucleotides GFF3779 - Colicin I receptor precursor, at 46,348 to 48,300 GFF3779 GFF3780 - Hexose phosphate uptake regulatory protein UhpC, at 48,344 to 49,666 GFF3780 GFF3781 - Phosphoserine phosphatase (EC 3.1.3.3), at 49,699 to 50,586 GFF3781 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1at 47.458 kb on - strand, within GFF3779at 47.585 kb on + strand, within GFF3779at 47.709 kb on - strand, within GFF3779at 47.869 kb on + strand, within GFF3779at 47.869 kb on + strand, within GFF3779at 47.870 kb on - strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.961 kb on + strand, within GFF3779at 48.076 kb on + strand, within GFF3779at 48.091 kb on + strand, within GFF3779at 48.251 kb on - strandat 48.347 kb on + strandat 48.411 kb on + strandat 48.412 kb on - strandat 48.415 kb on + strandat 48.416 kb on - strandat 48.417 kb on + strandat 48.579 kb on + strand, within GFF3780at 48.624 kb on + strand, within GFF3780at 48.663 kb on - strand, within GFF3780at 48.663 kb on - strand, within GFF3780at 48.733 kb on - strand, within GFF3780at 48.797 kb on + strand, within GFF3780at 48.889 kb on + strand, within GFF3780at 48.920 kb on - strand, within GFF3780at 48.921 kb on + strand, within GFF3780at 48.922 kb on - strand, within GFF3780at 49.022 kb on + strand, within GFF3780at 49.028 kb on - strand, within GFF3780at 49.028 kb on - strand, within GFF3780at 49.049 kb on - strand, within GFF3780at 49.049 kb on - strand, within GFF3780at 49.235 kb on - strand, within GFF3780at 49.453 kb on + strand, within GFF3780at 49.875 kb on + strand, within GFF3781at 50.099 kb on - strand, within GFF3781at 50.436 kb on + strand, within GFF3781

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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47,458 - GFF3779 0.57 +0.3
47,585 + GFF3779 0.63 -2.5
47,709 - GFF3779 0.70 +0.6
47,869 + GFF3779 0.78 +0.7
47,869 + GFF3779 0.78 +1.0
47,870 - GFF3779 0.78 +0.4
47,959 + GFF3779 0.82 -3.0
47,959 + GFF3779 0.82 +0.6
47,959 + GFF3779 0.82 +0.8
47,960 - GFF3779 0.83 +0.4
47,960 - GFF3779 0.83 +0.3
47,960 - GFF3779 0.83 +0.1
47,961 + GFF3779 0.83 +0.5
48,076 + GFF3779 0.88 +1.4
48,091 + GFF3779 0.89 -0.7
48,251 - -0.0
48,347 + -2.0
48,411 + +0.8
48,412 - -0.8
48,415 + -0.6
48,416 - +0.2
48,417 + -0.3
48,579 + GFF3780 0.18 -0.4
48,624 + GFF3780 0.21 +1.2
48,663 - GFF3780 0.24 +0.1
48,663 - GFF3780 0.24 -0.3
48,733 - GFF3780 0.29 -0.2
48,797 + GFF3780 0.34 +0.1
48,889 + GFF3780 0.41 -0.0
48,920 - GFF3780 0.44 -0.2
48,921 + GFF3780 0.44 +0.0
48,922 - GFF3780 0.44 -1.5
49,022 + GFF3780 0.51 +0.6
49,028 - GFF3780 0.52 -0.2
49,028 - GFF3780 0.52 -0.1
49,049 - GFF3780 0.53 +0.6
49,049 - GFF3780 0.53 -1.2
49,235 - GFF3780 0.67 -0.5
49,453 + GFF3780 0.84 +0.2
49,875 + GFF3781 0.20 -1.9
50,099 - GFF3781 0.45 -2.3
50,436 + GFF3781 0.83 +0.3

Or see this region's nucleotide sequence