Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3471 and GFF3472 are separated by 640 nucleotides GFF3472 and GFF3473 are separated by 122 nucleotides
GFF3471 - Putative two-component response regulator and GGDEF family protein YeaJ, at 220,338 to 221,831
GFF3471
GFF3472 - UPF0229 protein YeaH, at 222,472 to 223,758
GFF3472
GFF3473 - Serine protein kinase (prkA protein), P-loop containing, at 223,881 to 225,815
GFF3473
Position (kb) 222
223
224 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 221.480 kb on + strand, within GFF3471 at 221.514 kb on + strand, within GFF3471 at 221.719 kb on + strand at 221.720 kb on - strand at 222.264 kb on + strand at 222.334 kb on + strand at 222.416 kb on - strand at 222.474 kb on - strand at 222.602 kb on - strand, within GFF3472 at 222.642 kb on - strand, within GFF3472 at 222.644 kb on + strand, within GFF3472 at 222.711 kb on + strand, within GFF3472 at 222.737 kb on + strand, within GFF3472 at 222.738 kb on - strand, within GFF3472 at 222.885 kb on - strand, within GFF3472 at 222.905 kb on + strand, within GFF3472 at 223.311 kb on + strand, within GFF3472 at 223.350 kb on + strand, within GFF3472 at 223.581 kb on + strand, within GFF3472 at 223.585 kb on - strand, within GFF3472 at 223.680 kb on + strand at 223.681 kb on - strand at 223.759 kb on - strand at 223.838 kb on - strand at 223.942 kb on + strand at 224.012 kb on + strand at 224.181 kb on - strand, within GFF3473 at 224.291 kb on - strand, within GFF3473 at 224.417 kb on - strand, within GFF3473 at 224.540 kb on + strand, within GFF3473 at 224.540 kb on + strand, within GFF3473 at 224.590 kb on + strand, within GFF3473 at 224.622 kb on - strand, within GFF3473
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 221,480 + GFF3471 0.76 -0.9 221,514 + GFF3471 0.79 -0.1 221,719 + +0.9 221,720 - -0.0 222,264 + -0.0 222,334 + +0.1 222,416 - -3.1 222,474 - +0.3 222,602 - GFF3472 0.10 +0.1 222,642 - GFF3472 0.13 +1.6 222,644 + GFF3472 0.13 -0.2 222,711 + GFF3472 0.19 -0.1 222,737 + GFF3472 0.21 -0.2 222,738 - GFF3472 0.21 -2.0 222,885 - GFF3472 0.32 +0.4 222,905 + GFF3472 0.34 +1.5 223,311 + GFF3472 0.65 -1.0 223,350 + GFF3472 0.68 +1.2 223,581 + GFF3472 0.86 +0.4 223,585 - GFF3472 0.86 -0.2 223,680 + -1.0 223,681 - -0.1 223,759 - +1.0 223,838 - +0.7 223,942 + -0.9 224,012 + -0.6 224,181 - GFF3473 0.16 +0.5 224,291 - GFF3473 0.21 +0.2 224,417 - GFF3473 0.28 +0.5 224,540 + GFF3473 0.34 +0.6 224,540 + GFF3473 0.34 +0.5 224,590 + GFF3473 0.37 -0.5 224,622 - GFF3473 0.38 +0.1
Or see this region's nucleotide sequence