Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2491 and GFF2492 are separated by 3 nucleotides GFF2492 and GFF2493 are separated by 54 nucleotides GFF2493 and GFF2494 overlap by 25 nucleotides GFF2494 and GFF2495 are separated by 66 nucleotides GFF2495 and GFF2496 are separated by 180 nucleotides
GFF2491 - Putative transport protein, at 10,202 to 11,140
GFF2491
GFF2492 - Putative transport protein, at 11,144 to 11,542
GFF2492
GFF2493 - FIG01047459: hypothetical protein, at 11,597 to 11,710
GFF2493
GFF2494 - D-mannonate oxidoreductase (EC 1.1.1.57), at 11,686 to 13,152
GFF2494
GFF2495 - FIG00638357: hypothetical protein, at 13,219 to 13,422
GFF2495
GFF2496 - Transcriptional regulator, GntR family, at 13,603 to 14,289
GFF2496
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 10.739 kb on - strand, within GFF2491 at 11.395 kb on - strand, within GFF2492 at 11.411 kb on + strand, within GFF2492 at 11.419 kb on + strand, within GFF2492 at 11.673 kb on + strand, within GFF2493 at 11.912 kb on - strand, within GFF2494 at 11.912 kb on - strand, within GFF2494 at 12.168 kb on + strand, within GFF2494 at 12.169 kb on - strand, within GFF2494 at 12.217 kb on - strand, within GFF2494 at 12.280 kb on + strand, within GFF2494 at 12.468 kb on + strand, within GFF2494 at 12.615 kb on + strand, within GFF2494 at 12.616 kb on - strand, within GFF2494 at 12.616 kb on - strand, within GFF2494 at 12.618 kb on + strand, within GFF2494 at 12.708 kb on - strand, within GFF2494 at 12.713 kb on + strand, within GFF2494 at 12.721 kb on + strand, within GFF2494 at 12.771 kb on + strand, within GFF2494 at 13.413 kb on - strand at 13.486 kb on - strand at 13.487 kb on + strand at 13.731 kb on + strand, within GFF2496 at 13.785 kb on + strand, within GFF2496 at 13.785 kb on + strand, within GFF2496 at 13.926 kb on + strand, within GFF2496 at 13.926 kb on + strand, within GFF2496 at 13.926 kb on + strand, within GFF2496 at 13.926 kb on + strand, within GFF2496 at 13.927 kb on - strand, within GFF2496 at 13.958 kb on + strand, within GFF2496 at 14.070 kb on - strand, within GFF2496 at 14.070 kb on - strand, within GFF2496 at 14.070 kb on - strand, within GFF2496 at 14.121 kb on + strand, within GFF2496
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 10,739 - GFF2491 0.57 -0.2 11,395 - GFF2492 0.63 +0.5 11,411 + GFF2492 0.67 +0.6 11,419 + GFF2492 0.69 +0.4 11,673 + GFF2493 0.67 +0.1 11,912 - GFF2494 0.15 +0.0 11,912 - GFF2494 0.15 -0.8 12,168 + GFF2494 0.33 +0.9 12,169 - GFF2494 0.33 +0.1 12,217 - GFF2494 0.36 +0.5 12,280 + GFF2494 0.40 +0.9 12,468 + GFF2494 0.53 +0.8 12,615 + GFF2494 0.63 +0.1 12,616 - GFF2494 0.63 +0.9 12,616 - GFF2494 0.63 -0.2 12,618 + GFF2494 0.64 +0.2 12,708 - GFF2494 0.70 +0.4 12,713 + GFF2494 0.70 -0.6 12,721 + GFF2494 0.71 -0.5 12,771 + GFF2494 0.74 +0.3 13,413 - -0.6 13,486 - -1.3 13,487 + +0.1 13,731 + GFF2496 0.19 -2.5 13,785 + GFF2496 0.26 -0.4 13,785 + GFF2496 0.26 -0.0 13,926 + GFF2496 0.47 -1.7 13,926 + GFF2496 0.47 -2.4 13,926 + GFF2496 0.47 +0.4 13,926 + GFF2496 0.47 -0.8 13,927 - GFF2496 0.47 -0.9 13,958 + GFF2496 0.52 -2.2 14,070 - GFF2496 0.68 -0.0 14,070 - GFF2496 0.68 +0.3 14,070 - GFF2496 0.68 -1.3 14,121 + GFF2496 0.75 +1.0
Or see this region's nucleotide sequence