Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1877

Experiment: phi19h1_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1876 and GFF1877 are separated by 40 nucleotidesGFF1877 and GFF1878 are separated by 110 nucleotidesGFF1878 and GFF1879 are separated by 657 nucleotides GFF1876 - Chemotaxis protein CheV (EC 2.7.3.-), at 67,036 to 68,037 GFF1876 GFF1877 - Von Willebrand factor type A domain protein, at 68,078 to 69,859 GFF1877 GFF1878 - hypothetical protein, at 69,970 to 70,089 GFF1878 GFF1879 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 70,747 to 72,204 GFF1879 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 67.120 kb on - strandat 67.163 kb on + strand, within GFF1876at 67.167 kb on + strand, within GFF1876at 67.168 kb on - strand, within GFF1876at 67.381 kb on - strand, within GFF1876at 67.439 kb on - strand, within GFF1876at 67.450 kb on - strand, within GFF1876at 67.519 kb on + strand, within GFF1876at 67.519 kb on + strand, within GFF1876at 67.905 kb on + strand, within GFF1876at 67.905 kb on + strand, within GFF1876at 67.905 kb on + strand, within GFF1876at 67.907 kb on + strand, within GFF1876at 67.907 kb on + strand, within GFF1876at 67.908 kb on - strand, within GFF1876at 67.911 kb on + strand, within GFF1876at 67.911 kb on + strand, within GFF1876at 67.912 kb on - strand, within GFF1876at 67.912 kb on - strand, within GFF1876at 67.912 kb on - strand, within GFF1876at 67.931 kb on - strand, within GFF1876at 68.054 kb on + strandat 68.141 kb on - strandat 68.192 kb on - strandat 68.686 kb on - strand, within GFF1877at 68.686 kb on - strand, within GFF1877at 68.764 kb on + strand, within GFF1877at 68.769 kb on - strand, within GFF1877at 68.773 kb on + strand, within GFF1877at 68.774 kb on - strand, within GFF1877at 68.916 kb on - strand, within GFF1877at 68.921 kb on + strand, within GFF1877at 68.922 kb on - strand, within GFF1877at 69.130 kb on + strand, within GFF1877at 69.131 kb on - strand, within GFF1877at 69.142 kb on + strand, within GFF1877at 69.143 kb on - strand, within GFF1877at 69.173 kb on + strand, within GFF1877at 69.173 kb on + strand, within GFF1877at 69.173 kb on + strand, within GFF1877at 69.224 kb on - strand, within GFF1877at 69.224 kb on - strand, within GFF1877at 69.258 kb on + strand, within GFF1877at 69.301 kb on + strand, within GFF1877at 69.302 kb on - strand, within GFF1877at 69.346 kb on - strand, within GFF1877at 69.448 kb on + strand, within GFF1877at 69.524 kb on + strand, within GFF1877at 69.524 kb on + strand, within GFF1877at 69.524 kb on + strand, within GFF1877at 69.525 kb on - strand, within GFF1877at 70.091 kb on - strandat 70.126 kb on + strandat 70.198 kb on - strandat 70.234 kb on - strandat 70.515 kb on + strandat 70.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI
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67,120 - +0.4
67,163 + GFF1876 0.13 +0.2
67,167 + GFF1876 0.13 +0.7
67,168 - GFF1876 0.13 -0.2
67,381 - GFF1876 0.34 -1.3
67,439 - GFF1876 0.40 -1.9
67,450 - GFF1876 0.41 -3.0
67,519 + GFF1876 0.48 +0.0
67,519 + GFF1876 0.48 -0.9
67,905 + GFF1876 0.87 +1.2
67,905 + GFF1876 0.87 -0.5
67,905 + GFF1876 0.87 -0.1
67,907 + GFF1876 0.87 +1.1
67,907 + GFF1876 0.87 -0.4
67,908 - GFF1876 0.87 -0.6
67,911 + GFF1876 0.87 -0.2
67,911 + GFF1876 0.87 +0.5
67,912 - GFF1876 0.87 -2.1
67,912 - GFF1876 0.87 -0.4
67,912 - GFF1876 0.87 -3.2
67,931 - GFF1876 0.89 +0.1
68,054 + -3.2
68,141 - +0.6
68,192 - -0.2
68,686 - GFF1877 0.34 +0.8
68,686 - GFF1877 0.34 +0.0
68,764 + GFF1877 0.38 -0.2
68,769 - GFF1877 0.39 +0.0
68,773 + GFF1877 0.39 +0.5
68,774 - GFF1877 0.39 +2.3
68,916 - GFF1877 0.47 +0.1
68,921 + GFF1877 0.47 -1.0
68,922 - GFF1877 0.47 -0.5
69,130 + GFF1877 0.59 -0.9
69,131 - GFF1877 0.59 +0.2
69,142 + GFF1877 0.60 +0.1
69,143 - GFF1877 0.60 -0.8
69,173 + GFF1877 0.61 -0.4
69,173 + GFF1877 0.61 -0.3
69,173 + GFF1877 0.61 +0.4
69,224 - GFF1877 0.64 +0.0
69,224 - GFF1877 0.64 -1.1
69,258 + GFF1877 0.66 +0.5
69,301 + GFF1877 0.69 -0.7
69,302 - GFF1877 0.69 -0.6
69,346 - GFF1877 0.71 +0.5
69,448 + GFF1877 0.77 -0.8
69,524 + GFF1877 0.81 -1.4
69,524 + GFF1877 0.81 -0.2
69,524 + GFF1877 0.81 +0.4
69,525 - GFF1877 0.81 +0.5
70,091 - -2.0
70,126 + -3.0
70,198 - -1.3
70,234 - -1.0
70,515 + +0.2
70,634 - -1.4

Or see this region's nucleotide sequence