Experiment: phi19h1_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1072 and GFF1073 are separated by 70 nucleotides GFF1073 and GFF1074 are separated by 338 nucleotides GFF1074 and GFF1075 are separated by 384 nucleotides GFF1075 and GFF1076 are separated by 266 nucleotides
GFF1072 - Putative fimbrial chaperone protein, at 255,447 to 256,130
GFF1072
GFF1073 - putative fimbrial protein, at 256,201 to 256,746
GFF1073
GFF1074 - putative inner membrane protein, at 257,085 to 257,756
GFF1074
GFF1075 - FIG00638667: hypothetical protein, at 258,141 to 258,455
GFF1075
GFF1076 - Aerobic respiration control protein arcA, at 258,722 to 259,438
GFF1076
Position (kb) 257
258 Strain fitness (log2 ratio) -1
0
1 at 256.158 kb on + strand at 256.221 kb on - strand at 256.236 kb on + strand at 256.286 kb on + strand, within GFF1073 at 256.289 kb on + strand, within GFF1073 at 256.289 kb on + strand, within GFF1073 at 256.293 kb on + strand, within GFF1073 at 256.294 kb on - strand, within GFF1073 at 256.436 kb on + strand, within GFF1073 at 256.493 kb on - strand, within GFF1073 at 256.586 kb on + strand, within GFF1073 at 257.284 kb on - strand, within GFF1074 at 257.294 kb on - strand, within GFF1074 at 258.272 kb on + strand, within GFF1075 at 258.276 kb on - strand, within GFF1075 at 258.276 kb on - strand, within GFF1075 at 258.292 kb on - strand, within GFF1075 at 258.518 kb on - strand at 258.518 kb on - strand at 258.545 kb on + strand at 258.581 kb on + strand at 258.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phi19h1_phage 15 MOI remove 256,158 + -0.4 256,221 - +0.6 256,236 + +0.8 256,286 + GFF1073 0.16 +0.1 256,289 + GFF1073 0.16 -0.4 256,289 + GFF1073 0.16 +0.4 256,293 + GFF1073 0.17 -0.1 256,294 - GFF1073 0.17 +0.2 256,436 + GFF1073 0.43 -0.4 256,493 - GFF1073 0.53 -0.3 256,586 + GFF1073 0.71 +0.1 257,284 - GFF1074 0.30 -1.3 257,294 - GFF1074 0.31 +0.2 258,272 + GFF1075 0.42 -0.4 258,276 - GFF1075 0.43 +0.3 258,276 - GFF1075 0.43 +0.0 258,292 - GFF1075 0.48 -1.2 258,518 - -0.2 258,518 - +0.7 258,545 + +0.3 258,581 + +0.1 258,613 - -0.3
Or see this region's nucleotide sequence