Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_500

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_497 and PfGW456L13_498 are separated by 233 nucleotidesPfGW456L13_498 and PfGW456L13_499 are separated by 117 nucleotidesPfGW456L13_499 and PfGW456L13_500 are separated by 15 nucleotidesPfGW456L13_500 and PfGW456L13_501 are separated by 139 nucleotides PfGW456L13_497 - hypothetical protein, at 570,397 to 573,048 _497 PfGW456L13_498 - hypothetical protein, at 573,282 to 573,491 _498 PfGW456L13_499 - FIG00954152: hypothetical protein, at 573,609 to 573,890 _499 PfGW456L13_500 - FIG00954152: hypothetical protein, at 573,906 to 574,169 _500 PfGW456L13_501 - Ferredoxin reductase, at 574,309 to 575,838 _501 Position (kb) 573 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1at 572.979 kb on + strandat 572.979 kb on + strandat 572.980 kb on - strandat 573.148 kb on - strandat 573.148 kb on - strandat 573.290 kb on + strandat 573.291 kb on - strandat 573.291 kb on - strandat 573.310 kb on + strand, within PfGW456L13_498at 573.514 kb on - strandat 573.524 kb on + strandat 573.524 kb on + strandat 573.524 kb on + strandat 573.619 kb on + strandat 573.620 kb on - strandat 573.727 kb on + strand, within PfGW456L13_499at 573.727 kb on + strand, within PfGW456L13_499at 573.728 kb on - strand, within PfGW456L13_499at 573.728 kb on - strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.784 kb on + strand, within PfGW456L13_499at 573.785 kb on - strand, within PfGW456L13_499at 573.785 kb on - strand, within PfGW456L13_499at 573.907 kb on + strandat 573.908 kb on - strandat 573.946 kb on + strand, within PfGW456L13_500at 573.946 kb on + strand, within PfGW456L13_500at 573.946 kb on + strand, within PfGW456L13_500at 573.998 kb on + strand, within PfGW456L13_500at 573.999 kb on - strand, within PfGW456L13_500at 574.184 kb on + strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.214 kb on + strandat 574.214 kb on + strandat 574.214 kb on + strandat 574.214 kb on + strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.216 kb on + strandat 574.217 kb on - strandat 574.265 kb on + strandat 574.265 kb on + strandat 574.266 kb on - strandat 574.266 kb on - strandat 574.270 kb on - strandat 574.280 kb on + strandat 574.280 kb on + strandat 574.280 kb on + strandat 574.281 kb on - strandat 574.281 kb on - strandat 574.281 kb on - strandat 574.281 kb on - strandat 574.423 kb on + strandat 574.710 kb on - strand, within PfGW456L13_501at 574.736 kb on + strand, within PfGW456L13_501at 574.784 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.949 kb on - strand, within PfGW456L13_501at 574.949 kb on - strand, within PfGW456L13_501at 575.109 kb on + strand, within PfGW456L13_501at 575.109 kb on + strand, within PfGW456L13_501at 575.109 kb on + strand, within PfGW456L13_501at 575.110 kb on - strand, within PfGW456L13_501at 575.110 kb on - strand, within PfGW456L13_501at 575.162 kb on + strand, within PfGW456L13_501

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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572,979 + -0.7
572,979 + -0.1
572,980 - +0.2
573,148 - -0.0
573,148 - +1.0
573,290 + +0.1
573,291 - -0.2
573,291 - +0.1
573,310 + PfGW456L13_498 0.13 -0.6
573,514 - -0.9
573,524 + -0.4
573,524 + -0.1
573,524 + +0.4
573,619 + +0.3
573,620 - -0.0
573,727 + PfGW456L13_499 0.42 -1.9
573,727 + PfGW456L13_499 0.42 -0.5
573,728 - PfGW456L13_499 0.42 +0.5
573,728 - PfGW456L13_499 0.42 -1.3
573,742 + PfGW456L13_499 0.47 -0.1
573,742 + PfGW456L13_499 0.47 +0.1
573,742 + PfGW456L13_499 0.47 +0.4
573,742 + PfGW456L13_499 0.47 -0.0
573,742 + PfGW456L13_499 0.47 -0.2
573,742 + PfGW456L13_499 0.47 +0.1
573,742 + PfGW456L13_499 0.47 +0.2
573,742 + PfGW456L13_499 0.47 -0.3
573,742 + PfGW456L13_499 0.47 -0.8
573,742 + PfGW456L13_499 0.47 +0.4
573,742 + PfGW456L13_499 0.47 +0.3
573,743 - PfGW456L13_499 0.48 -0.3
573,743 - PfGW456L13_499 0.48 +0.2
573,743 - PfGW456L13_499 0.48 -0.5
573,743 - PfGW456L13_499 0.48 +0.2
573,743 - PfGW456L13_499 0.48 +0.4
573,743 - PfGW456L13_499 0.48 +0.8
573,743 - PfGW456L13_499 0.48 +0.2
573,743 - PfGW456L13_499 0.48 -0.7
573,743 - PfGW456L13_499 0.48 -1.4
573,743 - PfGW456L13_499 0.48 +0.0
573,784 + PfGW456L13_499 0.62 +0.9
573,785 - PfGW456L13_499 0.62 -0.4
573,785 - PfGW456L13_499 0.62 -0.8
573,907 + -0.7
573,908 - +0.2
573,946 + PfGW456L13_500 0.15 +0.7
573,946 + PfGW456L13_500 0.15 +0.2
573,946 + PfGW456L13_500 0.15 +0.0
573,998 + PfGW456L13_500 0.35 +0.6
573,999 - PfGW456L13_500 0.35 +0.2
574,184 + -0.8
574,185 - +0.4
574,185 - +0.2
574,185 - -0.3
574,185 - +0.7
574,185 - +0.1
574,185 - -2.0
574,185 - +0.1
574,214 + -0.0
574,214 + -2.8
574,214 + +0.0
574,214 + +0.1
574,215 - -0.4
574,215 - -0.2
574,215 - +0.4
574,215 - -0.5
574,216 + -0.5
574,217 - -0.4
574,265 + +0.3
574,265 + -0.2
574,266 - -0.8
574,266 - -0.8
574,270 - +0.5
574,280 + +0.1
574,280 + +0.4
574,280 + +0.6
574,281 - +0.1
574,281 - +0.0
574,281 - +0.6
574,281 - +0.7
574,423 + +0.2
574,710 - PfGW456L13_501 0.26 -0.3
574,736 + PfGW456L13_501 0.28 +0.4
574,784 + PfGW456L13_501 0.31 -0.3
574,792 + PfGW456L13_501 0.32 +0.2
574,792 + PfGW456L13_501 0.32 -1.2
574,792 + PfGW456L13_501 0.32 +0.1
574,792 + PfGW456L13_501 0.32 -0.3
574,792 + PfGW456L13_501 0.32 -1.7
574,792 + PfGW456L13_501 0.32 -0.2
574,792 + PfGW456L13_501 0.32 +0.3
574,948 + PfGW456L13_501 0.42 -0.2
574,948 + PfGW456L13_501 0.42 -0.1
574,948 + PfGW456L13_501 0.42 -0.5
574,948 + PfGW456L13_501 0.42 -0.4
574,948 + PfGW456L13_501 0.42 +0.6
574,949 - PfGW456L13_501 0.42 +0.2
574,949 - PfGW456L13_501 0.42 -0.3
575,109 + PfGW456L13_501 0.52 -0.1
575,109 + PfGW456L13_501 0.52 +0.0
575,109 + PfGW456L13_501 0.52 -0.5
575,110 - PfGW456L13_501 0.52 +1.5
575,110 - PfGW456L13_501 0.52 -1.0
575,162 + PfGW456L13_501 0.56 +0.4

Or see this region's nucleotide sequence