Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF813 and GFF814 are separated by 131 nucleotides GFF814 and GFF815 are separated by 146 nucleotides GFF815 and GFF816 are separated by 59 nucleotides GFF816 and GFF817 are separated by 53 nucleotides
GFF813 - Attachment invasion locus protein precursor, at 159,306 to 159,824
GFF813
GFF814 - Phage minor tail protein, at 159,956 to 160,651
GFF814
GFF815 - Phage tail assembly protein, at 160,798 to 161,397
GFF815
GFF816 - Phage tail assembly protein I, at 161,457 to 161,972
GFF816
GFF817 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 162,026 to 162,550
GFF817
Position (kb) 160
161
162 Strain fitness (log2 ratio) -1
0
1
2 at 159.863 kb on + strand at 159.907 kb on + strand at 159.925 kb on - strand at 160.061 kb on + strand, within GFF814 at 160.061 kb on + strand, within GFF814 at 160.065 kb on - strand, within GFF814 at 160.117 kb on + strand, within GFF814 at 160.117 kb on + strand, within GFF814 at 160.117 kb on + strand, within GFF814 at 160.118 kb on - strand, within GFF814 at 160.281 kb on - strand, within GFF814 at 160.485 kb on - strand, within GFF814 at 160.675 kb on - strand at 160.721 kb on - strand at 160.854 kb on - strand at 160.955 kb on - strand, within GFF815 at 161.038 kb on + strand, within GFF815 at 161.111 kb on - strand, within GFF815 at 161.225 kb on - strand, within GFF815 at 161.284 kb on + strand, within GFF815 at 161.284 kb on + strand, within GFF815 at 161.396 kb on - strand at 161.415 kb on - strand at 161.479 kb on + strand at 161.878 kb on - strand, within GFF816 at 162.194 kb on + strand, within GFF817 at 162.236 kb on - strand, within GFF817 at 162.253 kb on + strand, within GFF817 at 162.364 kb on + strand, within GFF817
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 159,863 + +0.1 159,907 + +0.6 159,925 - +1.8 160,061 + GFF814 0.15 +0.4 160,061 + GFF814 0.15 +1.9 160,065 - GFF814 0.16 +0.9 160,117 + GFF814 0.23 +0.2 160,117 + GFF814 0.23 +1.1 160,117 + GFF814 0.23 +0.9 160,118 - GFF814 0.23 +0.7 160,281 - GFF814 0.47 -0.0 160,485 - GFF814 0.76 +0.3 160,675 - +1.2 160,721 - +1.3 160,854 - +0.8 160,955 - GFF815 0.26 +1.5 161,038 + GFF815 0.40 +0.8 161,111 - GFF815 0.52 +0.3 161,225 - GFF815 0.71 -0.9 161,284 + GFF815 0.81 +0.8 161,284 + GFF815 0.81 +0.4 161,396 - +0.6 161,415 - +0.3 161,479 + +1.0 161,878 - GFF816 0.82 +0.5 162,194 + GFF817 0.32 +0.7 162,236 - GFF817 0.40 +0.6 162,253 + GFF817 0.43 +1.1 162,364 + GFF817 0.64 +0.6
Or see this region's nucleotide sequence