Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF625 and GFF626 overlap by 17 nucleotides GFF626 and GFF627 are separated by 43 nucleotides GFF627 and GFF628 overlap by 17 nucleotides GFF628 and GFF629 are separated by 500 nucleotides
GFF625 - Type IV pilus biogenesis protein PilN, at 367,329 to 367,868
GFF625
GFF626 - Type IV pilus biogenesis protein PilO, at 367,852 to 368,325
GFF626
GFF627 - Type IV pilus biogenesis protein PilP, at 368,369 to 368,716
GFF627
GFF628 - Type IV pilus biogenesis protein PilQ, at 368,700 to 369,869
GFF628
GFF629 - Shikimate kinase I (EC 2.7.1.71), at 370,370 to 370,855
GFF629
Position (kb) 368
369
370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 367.870 kb on - strand at 368.265 kb on + strand, within GFF626 at 368.334 kb on + strand at 368.334 kb on + strand at 368.334 kb on + strand at 368.335 kb on - strand at 368.335 kb on - strand at 368.335 kb on - strand at 368.565 kb on + strand, within GFF627 at 368.650 kb on + strand, within GFF627 at 368.749 kb on + strand at 368.809 kb on + strand at 368.810 kb on - strand at 368.876 kb on - strand, within GFF628 at 369.074 kb on - strand, within GFF628 at 369.077 kb on + strand, within GFF628 at 369.195 kb on - strand, within GFF628 at 369.298 kb on + strand, within GFF628 at 369.298 kb on + strand, within GFF628 at 369.298 kb on + strand, within GFF628 at 369.333 kb on - strand, within GFF628 at 369.354 kb on - strand, within GFF628 at 369.440 kb on - strand, within GFF628 at 369.593 kb on + strand, within GFF628 at 369.593 kb on + strand, within GFF628 at 369.623 kb on - strand, within GFF628 at 369.656 kb on + strand, within GFF628 at 369.656 kb on + strand, within GFF628 at 369.657 kb on - strand, within GFF628 at 369.680 kb on - strand, within GFF628 at 369.680 kb on - strand, within GFF628 at 369.685 kb on + strand, within GFF628 at 369.829 kb on + strand at 369.878 kb on + strand at 369.936 kb on + strand at 369.936 kb on + strand at 369.942 kb on - strand at 369.992 kb on + strand at 370.022 kb on + strand at 370.022 kb on + strand at 370.022 kb on + strand at 370.022 kb on + strand at 370.023 kb on - strand at 370.312 kb on + strand at 370.313 kb on - strand at 370.318 kb on + strand at 370.558 kb on + strand, within GFF629 at 370.558 kb on + strand, within GFF629 at 370.811 kb on - strand at 370.837 kb on + strand at 370.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 367,870 - -0.3 368,265 + GFF626 0.87 -0.8 368,334 + +2.5 368,334 + -0.3 368,334 + +0.3 368,335 - +1.8 368,335 - +0.4 368,335 - +0.1 368,565 + GFF627 0.56 +0.1 368,650 + GFF627 0.81 +0.1 368,749 + -0.5 368,809 + +1.1 368,810 - +0.0 368,876 - GFF628 0.15 +0.4 369,074 - GFF628 0.32 +0.4 369,077 + GFF628 0.32 -0.3 369,195 - GFF628 0.42 -0.2 369,298 + GFF628 0.51 +0.4 369,298 + GFF628 0.51 +0.4 369,298 + GFF628 0.51 +0.4 369,333 - GFF628 0.54 +0.9 369,354 - GFF628 0.56 -0.5 369,440 - GFF628 0.63 -0.0 369,593 + GFF628 0.76 +0.7 369,593 + GFF628 0.76 -1.1 369,623 - GFF628 0.79 +0.8 369,656 + GFF628 0.82 +0.6 369,656 + GFF628 0.82 -0.1 369,657 - GFF628 0.82 +0.5 369,680 - GFF628 0.84 -0.3 369,680 - GFF628 0.84 +0.7 369,685 + GFF628 0.84 -0.2 369,829 + -0.8 369,878 + +0.3 369,936 + +0.7 369,936 + -0.1 369,942 - -0.1 369,992 + -0.4 370,022 + -0.5 370,022 + +0.3 370,022 + -0.4 370,022 + -2.6 370,023 - +0.7 370,312 + -0.8 370,313 - -1.4 370,318 + -1.1 370,558 + GFF629 0.39 -4.7 370,558 + GFF629 0.39 -1.0 370,811 - -0.4 370,837 + -1.3 370,867 + -0.2
Or see this region's nucleotide sequence