Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF519

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF517 and GFF518 are separated by 6 nucleotidesGFF518 and GFF519 are separated by 91 nucleotidesGFF519 and GFF520 are separated by 375 nucleotides GFF517 - Oligopeptidase A (EC 3.4.24.70), at 247,096 to 249,138 GFF517 GFF518 - rRNA small subunit methyltransferase J, at 249,145 to 249,903 GFF518 GFF519 - Di/tripeptide permease DtpB, at 249,995 to 251,413 GFF519 GFF520 - Universal stress protein A, at 251,789 to 252,223 GFF520 Position (kb) 249 250 251 252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 249.192 kb on - strandat 249.649 kb on + strand, within GFF518at 249.874 kb on - strandat 249.922 kb on + strandat 249.951 kb on - strandat 249.997 kb on - strandat 250.222 kb on + strand, within GFF519at 250.280 kb on - strand, within GFF519at 250.312 kb on - strand, within GFF519at 250.418 kb on - strand, within GFF519at 250.418 kb on - strand, within GFF519at 250.432 kb on + strand, within GFF519at 250.570 kb on + strand, within GFF519at 250.597 kb on + strand, within GFF519at 250.726 kb on + strand, within GFF519at 250.727 kb on - strand, within GFF519at 250.815 kb on - strand, within GFF519at 250.917 kb on - strand, within GFF519at 250.939 kb on - strand, within GFF519at 251.009 kb on - strand, within GFF519at 251.019 kb on + strand, within GFF519at 251.064 kb on + strand, within GFF519at 251.071 kb on + strand, within GFF519at 251.099 kb on - strand, within GFF519at 251.157 kb on - strand, within GFF519at 251.157 kb on - strand, within GFF519at 251.306 kb on - strandat 251.394 kb on - strandat 251.394 kb on - strandat 251.458 kb on + strandat 251.459 kb on - strandat 251.459 kb on - strandat 251.459 kb on - strandat 251.480 kb on - strandat 251.533 kb on - strandat 251.618 kb on - strandat 251.745 kb on + strandat 251.745 kb on + strandat 251.747 kb on + strandat 251.748 kb on - strandat 251.788 kb on - strandat 251.788 kb on - strandat 251.788 kb on - strandat 251.920 kb on - strand, within GFF520at 251.920 kb on - strand, within GFF520at 251.983 kb on + strand, within GFF520at 252.052 kb on + strand, within GFF520at 252.217 kb on - strandat 252.240 kb on + strandat 252.241 kb on - strandat 252.241 kb on - strandat 252.322 kb on - strandat 252.343 kb on + strandat 252.343 kb on + strandat 252.343 kb on + strandat 252.344 kb on - strandat 252.349 kb on + strandat 252.349 kb on + strandat 252.350 kb on - strandat 252.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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249,192 - +1.8
249,649 + GFF518 0.66 -0.4
249,874 - -0.0
249,922 + -1.1
249,951 - -0.3
249,997 - +0.4
250,222 + GFF519 0.16 -0.3
250,280 - GFF519 0.20 +0.7
250,312 - GFF519 0.22 -0.6
250,418 - GFF519 0.30 +1.6
250,418 - GFF519 0.30 -1.6
250,432 + GFF519 0.31 -0.0
250,570 + GFF519 0.41 -0.1
250,597 + GFF519 0.42 +0.8
250,726 + GFF519 0.52 -1.8
250,727 - GFF519 0.52 -4.0
250,815 - GFF519 0.58 +0.7
250,917 - GFF519 0.65 +0.4
250,939 - GFF519 0.67 -0.6
251,009 - GFF519 0.71 -1.0
251,019 + GFF519 0.72 +0.1
251,064 + GFF519 0.75 -0.1
251,071 + GFF519 0.76 +0.0
251,099 - GFF519 0.78 -0.4
251,157 - GFF519 0.82 -0.6
251,157 - GFF519 0.82 +0.1
251,306 - -0.3
251,394 - -0.5
251,394 - +0.1
251,458 + +0.6
251,459 - +1.1
251,459 - +0.3
251,459 - +0.1
251,480 - -0.4
251,533 - +0.2
251,618 - +0.7
251,745 + -0.3
251,745 + +0.3
251,747 + -1.8
251,748 - +0.1
251,788 - +0.1
251,788 - -0.1
251,788 - +0.5
251,920 - GFF520 0.30 +0.6
251,920 - GFF520 0.30 -1.1
251,983 + GFF520 0.45 +0.6
252,052 + GFF520 0.60 +0.5
252,217 - -0.2
252,240 + -1.6
252,241 - +0.1
252,241 - +0.2
252,322 - +0.7
252,343 + +0.1
252,343 + -1.0
252,343 + -0.2
252,344 - -0.6
252,349 + -0.0
252,349 + +0.6
252,350 - +0.2
252,402 - -0.2

Or see this region's nucleotide sequence