Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4338

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4336 and GFF4337 are separated by 218 nucleotidesGFF4337 and GFF4338 are separated by 46 nucleotidesGFF4338 and GFF4339 are separated by 227 nucleotidesGFF4339 and GFF4340 are separated by 174 nucleotides GFF4336 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 116,992 to 117,810 GFF4336 GFF4337 - FIG001943: hypothetical protein YajQ, at 118,029 to 118,520 GFF4337 GFF4338 - Putative transport protein, at 118,567 to 119,931 GFF4338 GFF4339 - hypothetical protein, at 120,159 to 120,293 GFF4339 GFF4340 - corresponds to STY0478 from Accession AL513382: Salmonella typhi CT18, at 120,468 to 121,979 GFF4340 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 117.580 kb on - strand, within GFF4336at 117.612 kb on + strand, within GFF4336at 117.704 kb on - strand, within GFF4336at 117.798 kb on - strandat 117.826 kb on + strandat 117.826 kb on + strandat 117.950 kb on + strandat 117.991 kb on + strandat 117.992 kb on - strandat 118.163 kb on + strand, within GFF4337at 118.773 kb on + strand, within GFF4338at 118.792 kb on + strand, within GFF4338at 118.904 kb on + strand, within GFF4338at 118.954 kb on - strand, within GFF4338at 119.124 kb on - strand, within GFF4338at 119.124 kb on - strand, within GFF4338at 119.252 kb on - strand, within GFF4338at 119.268 kb on + strand, within GFF4338at 119.269 kb on - strand, within GFF4338at 119.269 kb on - strand, within GFF4338at 119.314 kb on - strand, within GFF4338at 119.452 kb on - strand, within GFF4338at 119.473 kb on + strand, within GFF4338at 119.496 kb on + strand, within GFF4338at 119.819 kb on + strandat 119.820 kb on - strandat 119.820 kb on - strandat 119.820 kb on - strandat 119.836 kb on + strandat 119.881 kb on + strandat 120.123 kb on - strandat 120.147 kb on - strandat 120.148 kb on + strandat 120.149 kb on - strandat 120.559 kb on + strandat 120.694 kb on - strand, within GFF4340at 120.696 kb on + strand, within GFF4340at 120.697 kb on - strand, within GFF4340at 120.697 kb on - strand, within GFF4340at 120.737 kb on + strand, within GFF4340at 120.801 kb on + strand, within GFF4340

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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117,580 - GFF4336 0.72 -0.7
117,612 + GFF4336 0.76 +0.8
117,704 - GFF4336 0.87 -0.9
117,798 - +0.6
117,826 + +0.2
117,826 + -0.2
117,950 + +0.0
117,991 + -0.4
117,992 - -0.4
118,163 + GFF4337 0.27 -0.5
118,773 + GFF4338 0.15 +0.7
118,792 + GFF4338 0.16 -0.5
118,904 + GFF4338 0.25 +0.3
118,954 - GFF4338 0.28 -2.2
119,124 - GFF4338 0.41 +0.9
119,124 - GFF4338 0.41 -0.2
119,252 - GFF4338 0.50 -2.6
119,268 + GFF4338 0.51 -1.1
119,269 - GFF4338 0.51 -0.7
119,269 - GFF4338 0.51 -1.3
119,314 - GFF4338 0.55 -0.3
119,452 - GFF4338 0.65 -0.2
119,473 + GFF4338 0.66 -1.5
119,496 + GFF4338 0.68 -1.1
119,819 + -1.4
119,820 - -1.0
119,820 - -0.4
119,820 - -2.0
119,836 + -0.2
119,881 + -0.3
120,123 - -0.8
120,147 - -0.6
120,148 + +0.6
120,149 - +0.2
120,559 + -1.5
120,694 - GFF4340 0.15 -0.3
120,696 + GFF4340 0.15 +0.5
120,697 - GFF4340 0.15 +0.3
120,697 - GFF4340 0.15 +0.1
120,737 + GFF4340 0.18 +0.1
120,801 + GFF4340 0.22 -0.2

Or see this region's nucleotide sequence