Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4231

Experiment: 6F2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4230 and GFF4231 are separated by 4 nucleotidesGFF4231 and GFF4232 overlap by 17 nucleotidesGFF4232 and GFF4233 are separated by 61 nucleotides GFF4230 - Putative exported protein precursor, at 9,917 to 11,242 GFF4230 GFF4231 - outer membrane fimbrial usher protein, at 11,247 to 13,808 GFF4231 GFF4232 - Putative fimbrial chaperone, at 13,792 to 14,553 GFF4232 GFF4233 - Fimbrial protein precursor, at 14,615 to 15,151 GFF4233 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 10.475 kb on - strand, within GFF4230at 10.479 kb on + strand, within GFF4230at 10.479 kb on + strand, within GFF4230at 10.479 kb on + strand, within GFF4230at 10.480 kb on - strand, within GFF4230at 10.480 kb on - strand, within GFF4230at 10.484 kb on - strand, within GFF4230at 10.707 kb on + strand, within GFF4230at 10.711 kb on + strand, within GFF4230at 10.830 kb on + strand, within GFF4230at 10.830 kb on + strand, within GFF4230at 10.845 kb on - strand, within GFF4230at 10.943 kb on + strand, within GFF4230at 10.959 kb on + strand, within GFF4230at 10.960 kb on - strand, within GFF4230at 11.170 kb on + strandat 11.171 kb on - strandat 11.390 kb on - strandat 11.548 kb on + strand, within GFF4231at 11.549 kb on - strand, within GFF4231at 11.825 kb on + strand, within GFF4231at 11.825 kb on + strand, within GFF4231at 11.826 kb on - strand, within GFF4231at 11.840 kb on - strand, within GFF4231at 11.840 kb on - strand, within GFF4231at 11.909 kb on + strand, within GFF4231at 11.915 kb on + strand, within GFF4231at 11.915 kb on + strand, within GFF4231at 11.916 kb on - strand, within GFF4231at 12.031 kb on + strand, within GFF4231at 12.032 kb on - strand, within GFF4231at 12.078 kb on - strand, within GFF4231at 12.122 kb on + strand, within GFF4231at 12.210 kb on + strand, within GFF4231at 12.212 kb on + strand, within GFF4231at 12.212 kb on + strand, within GFF4231at 12.213 kb on - strand, within GFF4231at 12.230 kb on + strand, within GFF4231at 12.230 kb on + strand, within GFF4231at 12.231 kb on - strand, within GFF4231at 12.231 kb on - strand, within GFF4231at 12.231 kb on - strand, within GFF4231at 12.231 kb on - strand, within GFF4231at 12.266 kb on + strand, within GFF4231at 12.272 kb on - strand, within GFF4231at 12.272 kb on - strand, within GFF4231at 12.465 kb on + strand, within GFF4231at 12.718 kb on + strand, within GFF4231at 12.719 kb on - strand, within GFF4231at 12.794 kb on - strand, within GFF4231at 12.859 kb on + strand, within GFF4231at 13.034 kb on + strand, within GFF4231at 13.078 kb on + strand, within GFF4231at 13.078 kb on + strand, within GFF4231at 13.078 kb on + strand, within GFF4231at 13.079 kb on - strand, within GFF4231at 13.079 kb on - strand, within GFF4231at 13.100 kb on + strand, within GFF4231at 13.107 kb on - strand, within GFF4231at 13.145 kb on + strand, within GFF4231at 13.149 kb on - strand, within GFF4231at 13.149 kb on - strand, within GFF4231at 13.150 kb on + strand, within GFF4231at 13.254 kb on + strand, within GFF4231at 13.259 kb on - strand, within GFF4231at 13.259 kb on - strand, within GFF4231at 13.362 kb on - strand, within GFF4231at 13.578 kb on - strandat 13.589 kb on + strandat 13.589 kb on + strandat 13.622 kb on - strandat 13.664 kb on + strandat 13.720 kb on + strandat 13.756 kb on - strandat 13.767 kb on + strandat 13.768 kb on - strandat 13.811 kb on + strandat 13.823 kb on - strandat 13.985 kb on - strand, within GFF4232at 14.017 kb on - strand, within GFF4232at 14.616 kb on + strandat 14.617 kb on - strandat 14.697 kb on + strand, within GFF4233

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
remove
10,475 - GFF4230 0.42 -1.0
10,479 + GFF4230 0.42 -0.8
10,479 + GFF4230 0.42 -0.5
10,479 + GFF4230 0.42 -0.5
10,480 - GFF4230 0.42 -0.3
10,480 - GFF4230 0.42 -0.3
10,484 - GFF4230 0.43 -0.3
10,707 + GFF4230 0.60 -0.0
10,711 + GFF4230 0.60 +0.9
10,830 + GFF4230 0.69 -0.1
10,830 + GFF4230 0.69 -0.5
10,845 - GFF4230 0.70 -0.6
10,943 + GFF4230 0.77 -0.7
10,959 + GFF4230 0.79 +0.8
10,960 - GFF4230 0.79 +0.6
11,170 + +0.9
11,171 - +0.7
11,390 - -0.7
11,548 + GFF4231 0.12 +0.5
11,549 - GFF4231 0.12 +0.1
11,825 + GFF4231 0.23 -2.2
11,825 + GFF4231 0.23 -0.9
11,826 - GFF4231 0.23 +1.3
11,840 - GFF4231 0.23 +0.3
11,840 - GFF4231 0.23 -0.8
11,909 + GFF4231 0.26 +0.6
11,915 + GFF4231 0.26 +1.2
11,915 + GFF4231 0.26 -0.4
11,916 - GFF4231 0.26 -0.4
12,031 + GFF4231 0.31 -0.1
12,032 - GFF4231 0.31 +0.0
12,078 - GFF4231 0.32 -0.3
12,122 + GFF4231 0.34 +0.2
12,210 + GFF4231 0.38 -0.2
12,212 + GFF4231 0.38 +0.1
12,212 + GFF4231 0.38 -0.1
12,213 - GFF4231 0.38 -0.4
12,230 + GFF4231 0.38 -0.2
12,230 + GFF4231 0.38 +0.9
12,231 - GFF4231 0.38 +0.2
12,231 - GFF4231 0.38 -0.6
12,231 - GFF4231 0.38 -0.3
12,231 - GFF4231 0.38 +0.1
12,266 + GFF4231 0.40 -3.6
12,272 - GFF4231 0.40 -0.5
12,272 - GFF4231 0.40 +0.3
12,465 + GFF4231 0.48 -0.3
12,718 + GFF4231 0.57 -0.8
12,719 - GFF4231 0.57 -2.6
12,794 - GFF4231 0.60 -0.4
12,859 + GFF4231 0.63 +0.3
13,034 + GFF4231 0.70 -0.7
13,078 + GFF4231 0.71 -0.0
13,078 + GFF4231 0.71 -2.7
13,078 + GFF4231 0.71 -1.1
13,079 - GFF4231 0.72 -0.4
13,079 - GFF4231 0.72 -0.2
13,100 + GFF4231 0.72 +0.1
13,107 - GFF4231 0.73 -2.6
13,145 + GFF4231 0.74 -2.0
13,149 - GFF4231 0.74 +0.1
13,149 - GFF4231 0.74 +0.3
13,150 + GFF4231 0.74 -1.3
13,254 + GFF4231 0.78 -0.5
13,259 - GFF4231 0.79 -0.9
13,259 - GFF4231 0.79 +1.9
13,362 - GFF4231 0.83 -0.1
13,578 - +0.0
13,589 + -1.0
13,589 + +1.7
13,622 - +0.5
13,664 + +0.4
13,720 + -1.3
13,756 - +0.6
13,767 + -0.8
13,768 - -1.2
13,811 + +0.5
13,823 - -0.4
13,985 - GFF4232 0.25 +0.5
14,017 - GFF4232 0.30 -0.5
14,616 + +0.9
14,617 - +0.1
14,697 + GFF4233 0.15 +0.8

Or see this region's nucleotide sequence