Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4230

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4228 and GFF4229 are separated by 46 nucleotidesGFF4229 and GFF4230 are separated by 139 nucleotidesGFF4230 and GFF4231 are separated by 4 nucleotides GFF4228 - Probable secreted protein, at 8,952 to 9,146 GFF4228 GFF4229 - Putative pilus chaperone, PapD family, at 9,193 to 9,777 GFF4229 GFF4230 - Putative exported protein precursor, at 9,917 to 11,242 GFF4230 GFF4231 - outer membrane fimbrial usher protein, at 11,247 to 13,808 GFF4231 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2 3at 9.117 kb on - strand, within GFF4228at 9.137 kb on + strandat 9.404 kb on + strand, within GFF4229at 9.404 kb on + strand, within GFF4229at 9.688 kb on - strand, within GFF4229at 9.688 kb on - strand, within GFF4229at 9.787 kb on - strandat 9.789 kb on + strandat 9.902 kb on - strandat 9.942 kb on - strandat 10.004 kb on - strandat 10.017 kb on + strandat 10.143 kb on + strand, within GFF4230at 10.144 kb on - strand, within GFF4230at 10.144 kb on - strand, within GFF4230at 10.475 kb on - strand, within GFF4230at 10.479 kb on + strand, within GFF4230at 10.479 kb on + strand, within GFF4230at 10.479 kb on + strand, within GFF4230at 10.480 kb on - strand, within GFF4230at 10.480 kb on - strand, within GFF4230at 10.484 kb on - strand, within GFF4230at 10.707 kb on + strand, within GFF4230at 10.711 kb on + strand, within GFF4230at 10.830 kb on + strand, within GFF4230at 10.830 kb on + strand, within GFF4230at 10.845 kb on - strand, within GFF4230at 10.943 kb on + strand, within GFF4230at 10.959 kb on + strand, within GFF4230at 10.960 kb on - strand, within GFF4230at 11.170 kb on + strandat 11.171 kb on - strandat 11.390 kb on - strandat 11.548 kb on + strand, within GFF4231at 11.549 kb on - strand, within GFF4231at 11.825 kb on + strand, within GFF4231at 11.825 kb on + strand, within GFF4231at 11.826 kb on - strand, within GFF4231at 11.840 kb on - strand, within GFF4231at 11.840 kb on - strand, within GFF4231at 11.909 kb on + strand, within GFF4231at 11.915 kb on + strand, within GFF4231at 11.915 kb on + strand, within GFF4231at 11.916 kb on - strand, within GFF4231at 12.031 kb on + strand, within GFF4231at 12.032 kb on - strand, within GFF4231at 12.078 kb on - strand, within GFF4231at 12.122 kb on + strand, within GFF4231at 12.210 kb on + strand, within GFF4231at 12.212 kb on + strand, within GFF4231at 12.212 kb on + strand, within GFF4231at 12.213 kb on - strand, within GFF4231at 12.230 kb on + strand, within GFF4231at 12.230 kb on + strand, within GFF4231at 12.231 kb on - strand, within GFF4231at 12.231 kb on - strand, within GFF4231at 12.231 kb on - strand, within GFF4231at 12.231 kb on - strand, within GFF4231

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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9,117 - GFF4228 0.85 +0.2
9,137 + +0.8
9,404 + GFF4229 0.36 -0.2
9,404 + GFF4229 0.36 -0.6
9,688 - GFF4229 0.85 +0.9
9,688 - GFF4229 0.85 -0.1
9,787 - +3.0
9,789 + +0.3
9,902 - -0.3
9,942 - +0.3
10,004 - -0.8
10,017 + +0.0
10,143 + GFF4230 0.17 -0.4
10,144 - GFF4230 0.17 +0.8
10,144 - GFF4230 0.17 +0.2
10,475 - GFF4230 0.42 -1.0
10,479 + GFF4230 0.42 -0.8
10,479 + GFF4230 0.42 -0.5
10,479 + GFF4230 0.42 -0.5
10,480 - GFF4230 0.42 -0.3
10,480 - GFF4230 0.42 -0.3
10,484 - GFF4230 0.43 -0.3
10,707 + GFF4230 0.60 -0.0
10,711 + GFF4230 0.60 +0.9
10,830 + GFF4230 0.69 -0.1
10,830 + GFF4230 0.69 -0.5
10,845 - GFF4230 0.70 -0.6
10,943 + GFF4230 0.77 -0.7
10,959 + GFF4230 0.79 +0.8
10,960 - GFF4230 0.79 +0.6
11,170 + +0.9
11,171 - +0.7
11,390 - -0.7
11,548 + GFF4231 0.12 +0.5
11,549 - GFF4231 0.12 +0.1
11,825 + GFF4231 0.23 -2.2
11,825 + GFF4231 0.23 -0.9
11,826 - GFF4231 0.23 +1.3
11,840 - GFF4231 0.23 +0.3
11,840 - GFF4231 0.23 -0.8
11,909 + GFF4231 0.26 +0.6
11,915 + GFF4231 0.26 +1.2
11,915 + GFF4231 0.26 -0.4
11,916 - GFF4231 0.26 -0.4
12,031 + GFF4231 0.31 -0.1
12,032 - GFF4231 0.31 +0.0
12,078 - GFF4231 0.32 -0.3
12,122 + GFF4231 0.34 +0.2
12,210 + GFF4231 0.38 -0.2
12,212 + GFF4231 0.38 +0.1
12,212 + GFF4231 0.38 -0.1
12,213 - GFF4231 0.38 -0.4
12,230 + GFF4231 0.38 -0.2
12,230 + GFF4231 0.38 +0.9
12,231 - GFF4231 0.38 +0.2
12,231 - GFF4231 0.38 -0.6
12,231 - GFF4231 0.38 -0.3
12,231 - GFF4231 0.38 +0.1

Or see this region's nucleotide sequence