Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF411

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF409 and GFF410 overlap by 4 nucleotidesGFF410 and GFF411 overlap by 4 nucleotidesGFF411 and GFF412 are separated by 298 nucleotides GFF409 - L-lactate dehydrogenase (EC 1.1.2.3), at 123,551 to 124,741 GFF409 GFF410 - Lactate-responsive regulator LldR in Enterobacteria, GntR family, at 124,738 to 125,514 GFF410 GFF411 - L-lactate permease, at 125,511 to 127,166 GFF411 GFF412 - Peptide transport system permease protein sapB (TC 3.A.1.5.5), at 127,465 to 131,850 GFF412 Position (kb) 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 124.643 kb on - strandat 124.644 kb on + strandat 124.746 kb on + strandat 124.767 kb on + strandat 124.767 kb on + strandat 124.768 kb on - strandat 124.869 kb on + strand, within GFF410at 124.958 kb on + strand, within GFF410at 124.958 kb on + strand, within GFF410at 124.959 kb on - strand, within GFF410at 124.962 kb on + strand, within GFF410at 124.962 kb on + strand, within GFF410at 124.963 kb on - strand, within GFF410at 124.963 kb on - strand, within GFF410at 125.387 kb on - strand, within GFF410at 125.549 kb on + strandat 125.567 kb on + strandat 125.567 kb on + strandat 125.568 kb on - strandat 125.568 kb on - strandat 125.757 kb on + strand, within GFF411at 125.757 kb on + strand, within GFF411at 125.897 kb on - strand, within GFF411at 126.018 kb on - strand, within GFF411at 126.076 kb on + strand, within GFF411at 126.076 kb on + strand, within GFF411at 126.077 kb on - strand, within GFF411at 126.089 kb on - strand, within GFF411at 126.159 kb on - strand, within GFF411at 126.172 kb on + strand, within GFF411at 126.173 kb on - strand, within GFF411at 126.284 kb on + strand, within GFF411at 126.285 kb on - strand, within GFF411at 126.285 kb on - strand, within GFF411at 126.285 kb on - strand, within GFF411at 126.713 kb on + strand, within GFF411at 126.956 kb on - strand, within GFF411at 126.956 kb on - strand, within GFF411at 127.048 kb on + strandat 127.048 kb on + strandat 127.049 kb on - strandat 127.049 kb on - strandat 127.049 kb on - strandat 127.049 kb on - strandat 127.068 kb on - strandat 127.233 kb on - strandat 127.286 kb on - strandat 127.317 kb on - strandat 127.346 kb on + strandat 127.458 kb on + strandat 127.466 kb on + strandat 127.533 kb on + strandat 127.558 kb on + strandat 127.788 kb on - strandat 127.804 kb on - strandat 127.877 kb on + strandat 127.877 kb on + strandat 127.878 kb on - strandat 128.028 kb on + strand, within GFF412at 128.029 kb on - strand, within GFF412at 128.031 kb on + strand, within GFF412at 128.031 kb on + strand, within GFF412at 128.060 kb on - strand, within GFF412at 128.089 kb on - strand, within GFF412at 128.163 kb on - strand, within GFF412

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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124,643 - +0.4
124,644 + +0.2
124,746 + +1.5
124,767 + +0.4
124,767 + +0.8
124,768 - -0.3
124,869 + GFF410 0.17 -0.2
124,958 + GFF410 0.28 -0.4
124,958 + GFF410 0.28 -0.5
124,959 - GFF410 0.28 +0.5
124,962 + GFF410 0.29 +0.9
124,962 + GFF410 0.29 -0.7
124,963 - GFF410 0.29 +0.3
124,963 - GFF410 0.29 +0.7
125,387 - GFF410 0.84 -0.3
125,549 + +0.1
125,567 + +0.1
125,567 + +0.3
125,568 - -1.0
125,568 - -2.0
125,757 + GFF411 0.15 +0.7
125,757 + GFF411 0.15 -0.0
125,897 - GFF411 0.23 -0.6
126,018 - GFF411 0.31 +0.1
126,076 + GFF411 0.34 -0.4
126,076 + GFF411 0.34 +0.1
126,077 - GFF411 0.34 +0.7
126,089 - GFF411 0.35 +0.6
126,159 - GFF411 0.39 -1.3
126,172 + GFF411 0.40 +1.5
126,173 - GFF411 0.40 +0.4
126,284 + GFF411 0.47 +0.1
126,285 - GFF411 0.47 -0.3
126,285 - GFF411 0.47 +0.7
126,285 - GFF411 0.47 -0.4
126,713 + GFF411 0.73 +0.3
126,956 - GFF411 0.87 -0.2
126,956 - GFF411 0.87 +0.2
127,048 + +0.3
127,048 + +1.1
127,049 - +0.8
127,049 - -0.3
127,049 - -0.3
127,049 - -0.0
127,068 - +0.2
127,233 - +0.0
127,286 - +0.3
127,317 - +0.3
127,346 + -0.0
127,458 + +0.2
127,466 + +0.8
127,533 + -0.3
127,558 + +0.0
127,788 - +0.6
127,804 - +0.4
127,877 + +0.6
127,877 + -1.1
127,878 - -1.3
128,028 + GFF412 0.13 +0.6
128,029 - GFF412 0.13 +0.8
128,031 + GFF412 0.13 +0.5
128,031 + GFF412 0.13 +0.7
128,060 - GFF412 0.14 +0.6
128,089 - GFF412 0.14 +0.5
128,163 - GFF412 0.16 -0.1

Or see this region's nucleotide sequence