Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3655 and GFF3656 are separated by 292 nucleotides GFF3656 and GFF3657 are separated by 9 nucleotides GFF3657 and GFF3658 are separated by 136 nucleotides GFF3658 and GFF3659 are separated by 283 nucleotides
GFF3655 - Probable transport protein, at 2,574 to 3,995
GFF3655
GFF3656 - Pyruvate formate-lyase activating enzyme (EC 1.97.1.4), at 4,288 to 4,935
GFF3656
GFF3657 - hypothetical protein, at 4,945 to 5,076
GFF3657
GFF3658 - FIG01046987: hypothetical protein, at 5,213 to 5,377
GFF3658
GFF3659 - FIG01045244: hypothetical protein, at 5,661 to 6,620
GFF3659
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3.399 kb on + strand, within GFF3655 at 3.399 kb on + strand, within GFF3655 at 3.427 kb on - strand, within GFF3655 at 3.549 kb on + strand, within GFF3655 at 3.565 kb on + strand, within GFF3655 at 3.566 kb on - strand, within GFF3655 at 3.692 kb on + strand, within GFF3655 at 3.787 kb on - strand, within GFF3655 at 3.829 kb on + strand, within GFF3655 at 3.830 kb on - strand, within GFF3655 at 3.830 kb on - strand, within GFF3655 at 4.081 kb on - strand at 4.167 kb on + strand at 4.293 kb on - strand at 4.354 kb on - strand, within GFF3656 at 4.405 kb on - strand, within GFF3656 at 4.425 kb on - strand, within GFF3656 at 4.452 kb on + strand, within GFF3656 at 4.563 kb on - strand, within GFF3656 at 4.842 kb on - strand, within GFF3656 at 4.861 kb on + strand, within GFF3656 at 4.862 kb on - strand, within GFF3656 at 5.247 kb on - strand, within GFF3658 at 5.247 kb on - strand, within GFF3658 at 5.247 kb on - strand, within GFF3658 at 5.355 kb on + strand, within GFF3658 at 5.366 kb on + strand at 5.367 kb on - strand at 5.367 kb on - strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.874 kb on - strand, within GFF3659
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 3,399 + GFF3655 0.58 +0.5 3,399 + GFF3655 0.58 -0.6 3,427 - GFF3655 0.60 +0.5 3,549 + GFF3655 0.69 +0.5 3,565 + GFF3655 0.70 +0.8 3,566 - GFF3655 0.70 +0.9 3,692 + GFF3655 0.79 -2.0 3,787 - GFF3655 0.85 -0.7 3,829 + GFF3655 0.88 -0.1 3,830 - GFF3655 0.88 +0.5 3,830 - GFF3655 0.88 +0.6 4,081 - -2.9 4,167 + +0.3 4,293 - -0.6 4,354 - GFF3656 0.10 -0.1 4,405 - GFF3656 0.18 +0.9 4,425 - GFF3656 0.21 -0.9 4,452 + GFF3656 0.25 +0.1 4,563 - GFF3656 0.42 +0.3 4,842 - GFF3656 0.85 +0.8 4,861 + GFF3656 0.88 -0.4 4,862 - GFF3656 0.89 +0.4 5,247 - GFF3658 0.21 +0.8 5,247 - GFF3658 0.21 +0.4 5,247 - GFF3658 0.21 +0.3 5,355 + GFF3658 0.86 -1.5 5,366 + +0.2 5,367 - +0.0 5,367 - -0.5 5,755 + -0.4 5,755 + +0.2 5,874 - GFF3659 0.22 +0.2
Or see this region's nucleotide sequence