Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3546

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3545 and GFF3546 are separated by 75 nucleotidesGFF3546 and GFF3547 are separated by 13 nucleotides GFF3545 - Transcriptional regulator, AraC family, at 297,790 to 298,680 GFF3545 GFF3546 - Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-), at 298,756 to 299,907 GFF3546 GFF3547 - Coenzyme A transferase, at 299,921 to 301,516 GFF3547 Position (kb) 298 299 300Strain fitness (log2 ratio) -2 -1 0 1at 298.064 kb on - strand, within GFF3545at 298.799 kb on + strandat 298.800 kb on - strandat 298.800 kb on - strandat 298.800 kb on - strandat 298.831 kb on - strandat 298.831 kb on - strandat 298.883 kb on + strand, within GFF3546at 299.019 kb on + strand, within GFF3546at 299.286 kb on + strand, within GFF3546at 299.418 kb on - strand, within GFF3546at 299.418 kb on - strand, within GFF3546at 299.536 kb on + strand, within GFF3546at 299.708 kb on + strand, within GFF3546at 300.393 kb on + strand, within GFF3547at 300.683 kb on - strand, within GFF3547

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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298,064 - GFF3545 0.31 +0.4
298,799 + -2.4
298,800 - -0.7
298,800 - +0.6
298,800 - +1.2
298,831 - -0.3
298,831 - -0.4
298,883 + GFF3546 0.11 -1.4
299,019 + GFF3546 0.23 +0.4
299,286 + GFF3546 0.46 -0.5
299,418 - GFF3546 0.57 -0.5
299,418 - GFF3546 0.57 +0.8
299,536 + GFF3546 0.68 -1.8
299,708 + GFF3546 0.83 -0.5
300,393 + GFF3547 0.30 +0.5
300,683 - GFF3547 0.48 -0.9

Or see this region's nucleotide sequence