Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3535

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3534 and GFF3535 are separated by 34 nucleotidesGFF3535 and GFF3536 are separated by 156 nucleotides GFF3534 - Selenoprotein O and cysteine-containing homologs, at 285,626 to 287,068 GFF3534 GFF3535 - Hemin uptake protein HemP, at 287,103 to 287,294 GFF3535 GFF3536 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 287,451 to 288,497 GFF3536 Position (kb) 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1at 286.188 kb on - strand, within GFF3534at 286.400 kb on + strand, within GFF3534at 286.400 kb on + strand, within GFF3534at 286.428 kb on - strand, within GFF3534at 286.596 kb on + strand, within GFF3534at 286.639 kb on + strand, within GFF3534at 286.709 kb on + strand, within GFF3534at 286.927 kb on - strandat 287.013 kb on - strandat 287.119 kb on - strandat 287.380 kb on - strandat 287.501 kb on + strandat 287.542 kb on + strandat 287.649 kb on - strand, within GFF3536at 287.658 kb on + strand, within GFF3536at 287.659 kb on - strand, within GFF3536at 287.664 kb on + strand, within GFF3536at 287.840 kb on - strand, within GFF3536at 287.844 kb on - strand, within GFF3536at 287.879 kb on + strand, within GFF3536at 287.881 kb on - strand, within GFF3536at 288.063 kb on - strand, within GFF3536at 288.139 kb on + strand, within GFF3536

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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286,188 - GFF3534 0.39 -0.9
286,400 + GFF3534 0.54 -0.2
286,400 + GFF3534 0.54 +0.1
286,428 - GFF3534 0.56 -0.3
286,596 + GFF3534 0.67 -0.2
286,639 + GFF3534 0.70 -1.1
286,709 + GFF3534 0.75 -0.4
286,927 - -1.4
287,013 - -0.2
287,119 - +0.5
287,380 - -0.6
287,501 + -2.1
287,542 + +0.5
287,649 - GFF3536 0.19 -1.1
287,658 + GFF3536 0.20 -0.4
287,659 - GFF3536 0.20 -1.3
287,664 + GFF3536 0.20 +0.6
287,840 - GFF3536 0.37 +0.6
287,844 - GFF3536 0.38 +0.1
287,879 + GFF3536 0.41 +0.3
287,881 - GFF3536 0.41 -3.3
288,063 - GFF3536 0.58 -0.2
288,139 + GFF3536 0.66 -0.3

Or see this region's nucleotide sequence