Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3322 and GFF3323 are separated by 61 nucleotides GFF3323 and GFF3324 are separated by 130 nucleotides GFF3324 and GFF3325 are separated by 88 nucleotides GFF3325 and GFF3326 are separated by 118 nucleotides
GFF3322 - Major curlin subunit precursor CsgA, at 93,681 to 94,136
GFF3322
GFF3323 - Putative curli production protein CsgC, at 94,198 to 94,524
GFF3323
GFF3324 - putative periplasmic protein, at 94,655 to 94,975
GFF3324
GFF3325 - COG2110, Macro domain, possibly ADP-ribose binding module, at 95,064 to 95,603
GFF3325
GFF3326 - Cardiolipin synthetase (EC 2.7.8.-), at 95,722 to 97,026
GFF3326
Position (kb) 95
96 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 94.132 kb on - strand at 94.396 kb on - strand, within GFF3323 at 94.464 kb on + strand, within GFF3323 at 94.697 kb on - strand, within GFF3324 at 94.961 kb on - strand at 94.988 kb on - strand at 95.087 kb on - strand at 95.096 kb on + strand at 95.297 kb on + strand, within GFF3325 at 95.439 kb on + strand, within GFF3325 at 95.506 kb on - strand, within GFF3325 at 95.524 kb on + strand, within GFF3325 at 95.539 kb on - strand, within GFF3325 at 95.572 kb on + strand at 95.572 kb on + strand at 95.752 kb on + strand at 95.755 kb on - strand at 95.770 kb on - strand at 95.847 kb on + strand at 95.899 kb on - strand, within GFF3326 at 95.901 kb on + strand, within GFF3326 at 96.188 kb on + strand, within GFF3326 at 96.188 kb on + strand, within GFF3326 at 96.188 kb on + strand, within GFF3326 at 96.189 kb on - strand, within GFF3326 at 96.189 kb on - strand, within GFF3326 at 96.245 kb on - strand, within GFF3326 at 96.246 kb on + strand, within GFF3326 at 96.276 kb on + strand, within GFF3326 at 96.277 kb on - strand, within GFF3326 at 96.369 kb on + strand, within GFF3326 at 96.447 kb on + strand, within GFF3326 at 96.505 kb on - strand, within GFF3326 at 96.539 kb on + strand, within GFF3326 at 96.540 kb on - strand, within GFF3326 at 96.544 kb on - strand, within GFF3326
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 94,132 - +0.4 94,396 - GFF3323 0.61 -0.2 94,464 + GFF3323 0.81 -0.7 94,697 - GFF3324 0.13 +0.4 94,961 - +0.1 94,988 - -2.1 95,087 - -0.0 95,096 + -1.2 95,297 + GFF3325 0.43 -0.1 95,439 + GFF3325 0.69 +0.4 95,506 - GFF3325 0.82 -0.1 95,524 + GFF3325 0.85 +0.6 95,539 - GFF3325 0.88 +0.3 95,572 + +0.1 95,572 + -1.3 95,752 + -4.0 95,755 - -0.4 95,770 - +0.1 95,847 + +1.2 95,899 - GFF3326 0.14 +0.4 95,901 + GFF3326 0.14 +0.2 96,188 + GFF3326 0.36 -1.6 96,188 + GFF3326 0.36 +0.0 96,188 + GFF3326 0.36 +0.1 96,189 - GFF3326 0.36 +3.3 96,189 - GFF3326 0.36 +0.7 96,245 - GFF3326 0.40 -2.8 96,246 + GFF3326 0.40 +0.0 96,276 + GFF3326 0.42 +0.3 96,277 - GFF3326 0.43 -0.1 96,369 + GFF3326 0.50 -1.6 96,447 + GFF3326 0.56 -0.0 96,505 - GFF3326 0.60 +0.8 96,539 + GFF3326 0.63 -1.1 96,540 - GFF3326 0.63 +0.0 96,544 - GFF3326 0.63 -0.0
Or see this region's nucleotide sequence