Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF274

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF273 and GFF274 are separated by 189 nucleotidesGFF274 and GFF275 overlap by 1 nucleotidesGFF275 and GFF276 are separated by 38 nucleotides GFF273 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 48,144 to 50,333 GFF273 GFF274 - Xaa-Pro dipeptidase PepQ (EC 3.4.13.9), at 50,523 to 51,854 GFF274 GFF275 - FIG000605: protein co-occurring with transport systems (COG1739), at 51,854 to 52,468 GFF275 GFF276 - Potassium uptake protein TrkH, at 52,507 to 53,958 GFF276 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.625 kb on + strand, within GFF273at 49.913 kb on + strand, within GFF273at 49.914 kb on - strand, within GFF273at 50.032 kb on - strand, within GFF273at 50.057 kb on + strand, within GFF273at 50.058 kb on - strand, within GFF273at 50.156 kb on + strandat 50.309 kb on - strandat 50.325 kb on - strandat 50.326 kb on + strandat 50.326 kb on + strandat 50.618 kb on + strandat 50.793 kb on - strand, within GFF274at 50.982 kb on + strand, within GFF274at 50.983 kb on - strand, within GFF274at 50.991 kb on + strand, within GFF274at 50.991 kb on + strand, within GFF274at 50.992 kb on - strand, within GFF274at 51.162 kb on + strand, within GFF274at 51.207 kb on + strand, within GFF274at 51.354 kb on - strand, within GFF274at 51.412 kb on - strand, within GFF274at 51.557 kb on - strand, within GFF274at 51.557 kb on - strand, within GFF274at 51.619 kb on - strand, within GFF274at 51.684 kb on + strand, within GFF274at 51.685 kb on - strand, within GFF274at 51.685 kb on - strand, within GFF274at 51.794 kb on + strandat 51.853 kb on - strandat 51.922 kb on + strand, within GFF275at 51.923 kb on - strand, within GFF275at 51.928 kb on - strand, within GFF275at 51.948 kb on + strand, within GFF275at 51.949 kb on - strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.161 kb on - strand, within GFF275at 52.161 kb on - strand, within GFF275at 52.161 kb on - strand, within GFF275at 52.168 kb on + strand, within GFF275at 52.202 kb on + strand, within GFF275at 52.228 kb on - strand, within GFF275at 52.271 kb on - strand, within GFF275at 52.271 kb on - strand, within GFF275at 52.287 kb on - strand, within GFF275at 52.318 kb on - strand, within GFF275at 52.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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49,625 + GFF273 0.68 -0.3
49,913 + GFF273 0.81 +0.7
49,914 - GFF273 0.81 -0.3
50,032 - GFF273 0.86 -1.5
50,057 + GFF273 0.87 -0.0
50,058 - GFF273 0.87 -0.5
50,156 + +0.3
50,309 - -0.0
50,325 - +0.2
50,326 + -0.2
50,326 + +0.1
50,618 + +0.0
50,793 - GFF274 0.20 +0.2
50,982 + GFF274 0.34 +0.3
50,983 - GFF274 0.35 -0.0
50,991 + GFF274 0.35 -1.4
50,991 + GFF274 0.35 -0.9
50,992 - GFF274 0.35 +0.5
51,162 + GFF274 0.48 +0.0
51,207 + GFF274 0.51 -0.2
51,354 - GFF274 0.62 -0.2
51,412 - GFF274 0.67 +0.0
51,557 - GFF274 0.78 +0.5
51,557 - GFF274 0.78 +0.6
51,619 - GFF274 0.82 +0.2
51,684 + GFF274 0.87 -0.8
51,685 - GFF274 0.87 -0.1
51,685 - GFF274 0.87 +0.3
51,794 + +0.2
51,853 - +0.5
51,922 + GFF275 0.11 +0.1
51,923 - GFF275 0.11 +0.8
51,928 - GFF275 0.12 -0.9
51,948 + GFF275 0.15 -0.6
51,949 - GFF275 0.15 -0.7
52,160 + GFF275 0.50 +1.2
52,160 + GFF275 0.50 -0.1
52,160 + GFF275 0.50 -1.9
52,160 + GFF275 0.50 -0.1
52,160 + GFF275 0.50 +1.1
52,161 - GFF275 0.50 +0.7
52,161 - GFF275 0.50 +0.3
52,161 - GFF275 0.50 -0.0
52,168 + GFF275 0.51 +2.4
52,202 + GFF275 0.57 +1.3
52,228 - GFF275 0.61 -0.7
52,271 - GFF275 0.68 +0.2
52,271 - GFF275 0.68 +0.3
52,287 - GFF275 0.70 -2.3
52,318 - GFF275 0.75 +0.4
52,467 - +0.4

Or see this region's nucleotide sequence