Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2199

Experiment: 6F2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2199 and GFF2200 are separated by 302 nucleotides GFF2199 - FIG01045596: hypothetical protein, at 156 to 314 GFF2199 GFF2200 - Phage CI-like repressor, at 617 to 823 GFF2200 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.153 kb on + strandat 0.154 kb on - strandat 0.181 kb on + strand, within GFF2199at 0.181 kb on + strand, within GFF2199at 0.206 kb on - strand, within GFF2199at 0.261 kb on + strand, within GFF2199at 0.295 kb on + strand, within GFF2199at 0.341 kb on + strandat 0.580 kb on + strandat 0.692 kb on - strand, within GFF2200at 0.692 kb on - strand, within GFF2200at 0.958 kb on + strandat 0.958 kb on + strandat 0.959 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
remove
153 + +0.5
154 - -0.5
181 + GFF2199 0.16 -1.0
181 + GFF2199 0.16 -1.2
206 - GFF2199 0.31 -2.4
261 + GFF2199 0.66 -1.9
295 + GFF2199 0.87 +0.0
341 + +0.3
580 + +0.4
692 - GFF2200 0.36 +0.0
692 - GFF2200 0.36 +0.9
958 + -0.2
958 + +0.2
959 - -0.7

Or see this region's nucleotide sequence