Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2103

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2101 and GFF2102 are separated by 61 nucleotidesGFF2102 and GFF2103 are separated by 102 nucleotidesGFF2103 and GFF2104 are separated by 17 nucleotides GFF2101 - Pyruvate formate-lyase (EC 2.3.1.54), at 10,395 to 10,778 GFF2101 GFF2102 - Transporter, LysE family, at 10,840 to 11,427 GFF2102 GFF2103 - LysR family transcriptional regulator YfiE, at 11,530 to 12,429 GFF2103 GFF2104 - ATP-dependent RNA helicase SrmB, at 12,447 to 13,781 GFF2104 Position (kb) 11 12 13Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 10.890 kb on + strandat 10.894 kb on + strandat 10.987 kb on + strand, within GFF2102at 10.987 kb on + strand, within GFF2102at 10.987 kb on + strand, within GFF2102at 10.988 kb on - strand, within GFF2102at 10.990 kb on - strand, within GFF2102at 11.040 kb on + strand, within GFF2102at 11.040 kb on + strand, within GFF2102at 11.183 kb on + strand, within GFF2102at 11.183 kb on + strand, within GFF2102at 11.391 kb on + strandat 11.392 kb on - strandat 11.392 kb on - strandat 11.392 kb on - strandat 11.392 kb on - strandat 11.411 kb on - strandat 11.564 kb on + strandat 11.914 kb on + strand, within GFF2103at 11.973 kb on - strand, within GFF2103at 12.079 kb on - strand, within GFF2103at 12.190 kb on - strand, within GFF2103at 12.201 kb on + strand, within GFF2103at 12.240 kb on - strand, within GFF2103at 12.267 kb on + strand, within GFF2103at 12.371 kb on + strandat 12.375 kb on + strandat 12.375 kb on + strandat 12.375 kb on + strandat 12.376 kb on - strandat 12.442 kb on + strandat 12.442 kb on + strandat 12.669 kb on + strand, within GFF2104at 12.909 kb on - strand, within GFF2104at 12.912 kb on - strand, within GFF2104

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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10,890 + +0.6
10,894 + -0.0
10,987 + GFF2102 0.25 -0.4
10,987 + GFF2102 0.25 +0.2
10,987 + GFF2102 0.25 +0.7
10,988 - GFF2102 0.25 -2.8
10,990 - GFF2102 0.26 -0.3
11,040 + GFF2102 0.34 +0.5
11,040 + GFF2102 0.34 -0.4
11,183 + GFF2102 0.58 -0.9
11,183 + GFF2102 0.58 +0.4
11,391 + -0.4
11,392 - -0.1
11,392 - -0.0
11,392 - -0.3
11,392 - -0.3
11,411 - -1.8
11,564 + +0.1
11,914 + GFF2103 0.43 +0.6
11,973 - GFF2103 0.49 +0.6
12,079 - GFF2103 0.61 +0.4
12,190 - GFF2103 0.73 +1.0
12,201 + GFF2103 0.75 -0.0
12,240 - GFF2103 0.79 +0.6
12,267 + GFF2103 0.82 -0.3
12,371 + +0.1
12,375 + -0.0
12,375 + +0.2
12,375 + -0.3
12,376 - -0.5
12,442 + +0.0
12,442 + +0.7
12,669 + GFF2104 0.17 +1.1
12,909 - GFF2104 0.35 -0.4
12,912 - GFF2104 0.35 -4.1

Or see this region's nucleotide sequence