Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1872 and GFF1873 are separated by 54 nucleotides GFF1873 and GFF1874 are separated by 129 nucleotides GFF1874 and GFF1875 are separated by 81 nucleotides GFF1875 and GFF1876 are separated by 65 nucleotides
GFF1872 - ElaB protein, at 65,171 to 65,476
GFF1872
GFF1873 - ElaA protein, at 65,531 to 65,992
GFF1873
GFF1874 - hypothetical protein, at 66,122 to 66,259
GFF1874
GFF1875 - Ribonuclease Z (EC 3.1.26.11), at 66,341 to 66,970
GFF1875
GFF1876 - Chemotaxis protein CheV (EC 2.7.3.-), at 67,036 to 68,037
GFF1876
Position (kb) 66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 65.371 kb on - strand, within GFF1872 at 65.403 kb on - strand, within GFF1872 at 65.470 kb on - strand at 65.508 kb on + strand at 65.509 kb on - strand at 65.512 kb on + strand at 65.513 kb on - strand at 65.513 kb on - strand at 65.655 kb on + strand, within GFF1873 at 65.655 kb on + strand, within GFF1873 at 65.657 kb on + strand, within GFF1873 at 65.843 kb on - strand, within GFF1873 at 65.862 kb on - strand, within GFF1873 at 66.123 kb on + strand at 66.124 kb on - strand at 66.200 kb on - strand, within GFF1874 at 66.283 kb on - strand at 66.324 kb on + strand at 66.326 kb on + strand at 66.641 kb on + strand, within GFF1875 at 66.668 kb on + strand, within GFF1875 at 66.865 kb on + strand, within GFF1875 at 66.865 kb on + strand, within GFF1875 at 66.969 kb on - strand at 67.032 kb on + strand at 67.033 kb on - strand at 67.120 kb on - strand at 67.163 kb on + strand, within GFF1876 at 67.167 kb on + strand, within GFF1876 at 67.168 kb on - strand, within GFF1876 at 67.381 kb on - strand, within GFF1876 at 67.439 kb on - strand, within GFF1876 at 67.450 kb on - strand, within GFF1876 at 67.519 kb on + strand, within GFF1876 at 67.519 kb on + strand, within GFF1876 at 67.905 kb on + strand, within GFF1876 at 67.905 kb on + strand, within GFF1876 at 67.905 kb on + strand, within GFF1876 at 67.907 kb on + strand, within GFF1876 at 67.907 kb on + strand, within GFF1876 at 67.908 kb on - strand, within GFF1876 at 67.911 kb on + strand, within GFF1876 at 67.911 kb on + strand, within GFF1876 at 67.912 kb on - strand, within GFF1876 at 67.912 kb on - strand, within GFF1876 at 67.912 kb on - strand, within GFF1876 at 67.931 kb on - strand, within GFF1876
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 65,371 - GFF1872 0.65 +2.4 65,403 - GFF1872 0.76 +0.4 65,470 - -0.2 65,508 + +1.0 65,509 - -0.5 65,512 + +0.1 65,513 - -0.3 65,513 - +0.5 65,655 + GFF1873 0.27 +0.6 65,655 + GFF1873 0.27 -3.8 65,657 + GFF1873 0.27 +0.4 65,843 - GFF1873 0.68 +0.2 65,862 - GFF1873 0.72 +0.1 66,123 + +0.2 66,124 - +0.6 66,200 - GFF1874 0.57 +0.3 66,283 - -0.8 66,324 + -0.6 66,326 + +0.2 66,641 + GFF1875 0.48 +0.2 66,668 + GFF1875 0.52 +0.5 66,865 + GFF1875 0.83 +0.3 66,865 + GFF1875 0.83 +0.2 66,969 - +0.7 67,032 + -0.1 67,033 - +0.7 67,120 - +0.7 67,163 + GFF1876 0.13 +0.2 67,167 + GFF1876 0.13 +0.3 67,168 - GFF1876 0.13 +0.3 67,381 - GFF1876 0.34 +0.6 67,439 - GFF1876 0.40 +1.0 67,450 - GFF1876 0.41 +0.7 67,519 + GFF1876 0.48 +0.6 67,519 + GFF1876 0.48 +0.3 67,905 + GFF1876 0.87 +0.6 67,905 + GFF1876 0.87 +1.9 67,905 + GFF1876 0.87 +0.1 67,907 + GFF1876 0.87 -1.2 67,907 + GFF1876 0.87 +0.5 67,908 - GFF1876 0.87 +0.7 67,911 + GFF1876 0.87 +0.0 67,911 + GFF1876 0.87 +0.1 67,912 - GFF1876 0.87 +0.3 67,912 - GFF1876 0.87 +0.4 67,912 - GFF1876 0.87 -1.0 67,931 - GFF1876 0.89 +0.0
Or see this region's nucleotide sequence