Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1581 and GFF1582 are separated by 14 nucleotides GFF1582 and GFF1583 are separated by 98 nucleotides GFF1583 and GFF1584 overlap by 4 nucleotides GFF1584 and GFF1585 overlap by 28 nucleotides
GFF1581 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 39,333 to 39,767
GFF1581
GFF1582 - FIG01046421: hypothetical protein, at 39,782 to 39,940
GFF1582
GFF1583 - Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib, at 40,039 to 40,284
GFF1583
GFF1584 - Ribonucleotide reduction protein NrdI, at 40,281 to 40,691
GFF1584
GFF1585 - Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1), at 40,664 to 42,808
GFF1585
Position (kb) 40
41 Strain fitness (log2 ratio) -1
0
1
2 at 39.302 kb on + strand at 39.303 kb on - strand at 39.303 kb on - strand at 39.361 kb on - strand at 39.381 kb on + strand, within GFF1581 at 39.540 kb on - strand, within GFF1581 at 39.544 kb on + strand, within GFF1581 at 39.544 kb on + strand, within GFF1581 at 39.660 kb on + strand, within GFF1581 at 40.296 kb on + strand at 40.319 kb on + strand at 40.362 kb on - strand, within GFF1584 at 40.404 kb on + strand, within GFF1584 at 40.654 kb on + strand at 40.756 kb on + strand at 40.756 kb on + strand at 40.875 kb on - strand at 40.997 kb on + strand, within GFF1585 at 40.998 kb on - strand, within GFF1585 at 41.158 kb on - strand, within GFF1585 at 41.435 kb on + strand, within GFF1585 at 41.605 kb on - strand, within GFF1585 at 41.605 kb on - strand, within GFF1585 at 41.665 kb on - strand, within GFF1585
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 39,302 + -0.4 39,303 - -0.3 39,303 - -0.1 39,361 - -0.8 39,381 + GFF1581 0.11 -0.5 39,540 - GFF1581 0.48 -0.8 39,544 + GFF1581 0.49 +0.9 39,544 + GFF1581 0.49 +1.7 39,660 + GFF1581 0.75 +1.9 40,296 + -0.5 40,319 + -0.3 40,362 - GFF1584 0.20 -0.3 40,404 + GFF1584 0.30 -1.4 40,654 + -1.4 40,756 + +0.4 40,756 + -0.1 40,875 - +0.4 40,997 + GFF1585 0.16 +0.3 40,998 - GFF1585 0.16 -0.1 41,158 - GFF1585 0.23 +0.4 41,435 + GFF1585 0.36 -0.5 41,605 - GFF1585 0.44 +0.5 41,605 - GFF1585 0.44 +0.1 41,665 - GFF1585 0.47 +0.5
Or see this region's nucleotide sequence