Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1403

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1402 and GFF1403 are separated by 14 nucleotidesGFF1403 and GFF1404 are separated by 131 nucleotides GFF1402 - Maltose/maltodextrin ABC transporter, permease protein MalG, at 46,878 to 47,768 GFF1402 GFF1403 - Maltose/maltodextrin ABC transporter, permease protein MalF, at 47,783 to 49,327 GFF1403 GFF1404 - Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE, at 49,459 to 50,649 GFF1404 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 46.811 kb on + strandat 46.811 kb on + strandat 46.827 kb on - strandat 46.872 kb on + strandat 47.040 kb on - strand, within GFF1402at 47.040 kb on - strand, within GFF1402at 47.041 kb on + strand, within GFF1402at 47.041 kb on + strand, within GFF1402at 47.111 kb on + strand, within GFF1402at 47.111 kb on + strand, within GFF1402at 47.230 kb on + strand, within GFF1402at 47.321 kb on - strand, within GFF1402at 47.321 kb on - strand, within GFF1402at 47.321 kb on - strand, within GFF1402at 47.321 kb on - strand, within GFF1402at 47.321 kb on - strand, within GFF1402at 47.489 kb on + strand, within GFF1402at 47.653 kb on - strand, within GFF1402at 47.772 kb on + strandat 47.772 kb on + strandat 47.772 kb on + strandat 47.773 kb on - strandat 47.775 kb on + strandat 47.775 kb on + strandat 47.775 kb on + strandat 47.914 kb on - strandat 47.914 kb on - strandat 47.920 kb on - strandat 48.180 kb on + strand, within GFF1403at 48.181 kb on - strand, within GFF1403at 48.379 kb on - strand, within GFF1403at 48.383 kb on - strand, within GFF1403at 48.411 kb on - strand, within GFF1403at 48.557 kb on - strand, within GFF1403at 48.562 kb on + strand, within GFF1403at 48.562 kb on + strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.563 kb on - strand, within GFF1403at 48.564 kb on + strand, within GFF1403at 48.565 kb on - strand, within GFF1403at 48.646 kb on - strand, within GFF1403at 48.746 kb on - strand, within GFF1403at 48.746 kb on - strand, within GFF1403at 48.955 kb on - strand, within GFF1403at 49.047 kb on + strand, within GFF1403at 49.051 kb on + strand, within GFF1403at 49.055 kb on - strand, within GFF1403at 49.140 kb on + strand, within GFF1403at 49.141 kb on - strand, within GFF1403at 49.162 kb on + strand, within GFF1403at 49.162 kb on + strand, within GFF1403at 49.165 kb on - strand, within GFF1403at 49.220 kb on + strandat 49.220 kb on + strandat 49.221 kb on - strandat 49.224 kb on + strandat 49.229 kb on + strandat 49.230 kb on - strandat 49.230 kb on - strandat 49.236 kb on - strandat 49.242 kb on + strandat 49.272 kb on - strandat 49.282 kb on + strandat 49.282 kb on + strandat 49.460 kb on + strandat 49.464 kb on + strandat 49.464 kb on + strandat 49.550 kb on + strandat 49.755 kb on + strand, within GFF1404at 49.847 kb on + strand, within GFF1404at 50.045 kb on + strand, within GFF1404at 50.155 kb on + strand, within GFF1404at 50.282 kb on - strand, within GFF1404at 50.282 kb on - strand, within GFF1404

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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46,811 + -0.4
46,811 + +0.5
46,827 - -0.5
46,872 + +0.2
47,040 - GFF1402 0.18 -0.1
47,040 - GFF1402 0.18 +0.2
47,041 + GFF1402 0.18 +0.4
47,041 + GFF1402 0.18 -0.2
47,111 + GFF1402 0.26 +0.5
47,111 + GFF1402 0.26 +0.0
47,230 + GFF1402 0.40 -0.5
47,321 - GFF1402 0.50 +0.2
47,321 - GFF1402 0.50 -1.2
47,321 - GFF1402 0.50 +0.2
47,321 - GFF1402 0.50 +0.0
47,321 - GFF1402 0.50 +0.1
47,489 + GFF1402 0.69 +0.8
47,653 - GFF1402 0.87 -0.9
47,772 + -0.5
47,772 + -3.4
47,772 + -0.1
47,773 - +0.1
47,775 + +0.5
47,775 + +0.8
47,775 + +0.3
47,914 - -0.1
47,914 - -0.1
47,920 - +0.4
48,180 + GFF1403 0.26 +0.2
48,181 - GFF1403 0.26 -2.9
48,379 - GFF1403 0.39 -1.1
48,383 - GFF1403 0.39 -0.6
48,411 - GFF1403 0.41 +0.8
48,557 - GFF1403 0.50 +0.3
48,562 + GFF1403 0.50 +0.2
48,562 + GFF1403 0.50 -0.8
48,563 - GFF1403 0.50 -0.6
48,563 - GFF1403 0.50 +0.5
48,563 - GFF1403 0.50 +0.7
48,564 + GFF1403 0.51 +0.5
48,565 - GFF1403 0.51 +0.6
48,646 - GFF1403 0.56 -0.1
48,746 - GFF1403 0.62 +0.3
48,746 - GFF1403 0.62 -0.4
48,955 - GFF1403 0.76 -0.2
49,047 + GFF1403 0.82 -0.3
49,051 + GFF1403 0.82 -0.1
49,055 - GFF1403 0.82 +0.6
49,140 + GFF1403 0.88 +0.3
49,141 - GFF1403 0.88 +0.5
49,162 + GFF1403 0.89 -0.3
49,162 + GFF1403 0.89 +0.2
49,165 - GFF1403 0.89 -0.4
49,220 + -0.3
49,220 + +0.6
49,221 - +0.3
49,224 + +0.1
49,229 + -0.4
49,230 - +0.6
49,230 - -0.0
49,236 - +0.3
49,242 + -1.2
49,272 - +0.5
49,282 + +0.0
49,282 + -1.0
49,460 + -0.1
49,464 + +0.6
49,464 + +2.0
49,550 + +0.2
49,755 + GFF1404 0.25 +0.4
49,847 + GFF1404 0.33 +0.9
50,045 + GFF1404 0.49 -2.2
50,155 + GFF1404 0.58 +0.3
50,282 - GFF1404 0.69 -0.3
50,282 - GFF1404 0.69 +0.2

Or see this region's nucleotide sequence