Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF786 and GFF787 are separated by 499 nucleotides GFF787 and GFF788 are separated by 112 nucleotides GFF788 and GFF789 are separated by 182 nucleotides GFF789 and GFF790 overlap by 1 nucleotides
GFF786 - Adenine-specific methyltransferase (EC 2.1.1.72), at 135,888 to 136,037
GFF786
GFF787 - FIG00642546: hypothetical protein, at 136,537 to 136,905
GFF787
GFF788 - ATP-dependent RNA helicase YejH, at 137,018 to 138,646
GFF788
GFF789 - DNA primase (EC 2.7.7.-), phage-associated, at 138,829 to 139,611
GFF789
GFF790 - FIG01220455: hypothetical protein, at 139,611 to 140,471
GFF790
Position (kb) 137
138
139 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 136.148 kb on - strand at 136.149 kb on - strand at 136.253 kb on - strand at 136.255 kb on - strand at 136.462 kb on - strand at 136.467 kb on - strand at 136.471 kb on - strand at 136.484 kb on - strand at 136.619 kb on - strand, within GFF787 at 136.683 kb on + strand, within GFF787 at 136.705 kb on - strand, within GFF787 at 136.860 kb on + strand, within GFF787 at 136.914 kb on - strand at 137.093 kb on - strand at 137.105 kb on + strand at 137.105 kb on + strand at 137.106 kb on - strand at 137.206 kb on - strand, within GFF788 at 137.240 kb on + strand, within GFF788 at 137.449 kb on - strand, within GFF788 at 137.464 kb on + strand, within GFF788 at 137.492 kb on + strand, within GFF788 at 137.492 kb on + strand, within GFF788 at 137.493 kb on - strand, within GFF788 at 137.493 kb on - strand, within GFF788 at 137.510 kb on - strand, within GFF788 at 137.559 kb on - strand, within GFF788 at 137.671 kb on + strand, within GFF788 at 137.725 kb on + strand, within GFF788 at 137.794 kb on + strand, within GFF788 at 138.179 kb on + strand, within GFF788 at 138.224 kb on - strand, within GFF788 at 138.482 kb on + strand, within GFF788 at 138.483 kb on - strand, within GFF788 at 138.586 kb on - strand at 138.586 kb on - strand at 138.586 kb on - strand at 138.588 kb on + strand at 138.607 kb on - strand at 138.622 kb on + strand at 138.809 kb on + strand at 138.885 kb on - strand at 138.950 kb on + strand, within GFF789 at 139.039 kb on - strand, within GFF789 at 139.095 kb on - strand, within GFF789 at 139.108 kb on + strand, within GFF789 at 139.119 kb on + strand, within GFF789 at 139.145 kb on - strand, within GFF789 at 139.228 kb on - strand, within GFF789 at 139.232 kb on - strand, within GFF789 at 139.232 kb on - strand, within GFF789 at 139.232 kb on - strand, within GFF789 at 139.232 kb on - strand, within GFF789 at 139.333 kb on + strand, within GFF789 at 139.463 kb on - strand, within GFF789 at 139.548 kb on + strand at 139.549 kb on - strand at 139.616 kb on + strand at 139.616 kb on + strand at 139.617 kb on - strand at 139.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 136,148 - -1.3 136,149 - -0.4 136,253 - -0.1 136,255 - -0.4 136,462 - -0.1 136,467 - -0.5 136,471 - -0.8 136,484 - +0.0 136,619 - GFF787 0.22 -0.7 136,683 + GFF787 0.40 -1.1 136,705 - GFF787 0.46 -0.9 136,860 + GFF787 0.88 +0.3 136,914 - -0.9 137,093 - -1.2 137,105 + -0.6 137,105 + -0.6 137,106 - -0.9 137,206 - GFF788 0.12 +0.4 137,240 + GFF788 0.14 +0.1 137,449 - GFF788 0.26 -0.7 137,464 + GFF788 0.27 -4.0 137,492 + GFF788 0.29 -0.8 137,492 + GFF788 0.29 -0.6 137,493 - GFF788 0.29 -1.9 137,493 - GFF788 0.29 -1.0 137,510 - GFF788 0.30 -0.8 137,559 - GFF788 0.33 -0.6 137,671 + GFF788 0.40 -2.9 137,725 + GFF788 0.43 -0.3 137,794 + GFF788 0.48 -1.2 138,179 + GFF788 0.71 +0.1 138,224 - GFF788 0.74 -1.0 138,482 + GFF788 0.90 -0.4 138,483 - GFF788 0.90 -0.9 138,586 - -0.4 138,586 - -0.6 138,586 - -0.1 138,588 + -0.3 138,607 - -1.4 138,622 + +0.7 138,809 + -0.9 138,885 - -0.4 138,950 + GFF789 0.15 -1.1 139,039 - GFF789 0.27 -0.8 139,095 - GFF789 0.34 -0.9 139,108 + GFF789 0.36 -1.3 139,119 + GFF789 0.37 -1.1 139,145 - GFF789 0.40 -1.0 139,228 - GFF789 0.51 -0.6 139,232 - GFF789 0.51 -1.7 139,232 - GFF789 0.51 -0.4 139,232 - GFF789 0.51 -3.4 139,232 - GFF789 0.51 -0.4 139,333 + GFF789 0.64 -0.1 139,463 - GFF789 0.81 -2.0 139,548 + -0.2 139,549 - -0.6 139,616 + -1.1 139,616 + +1.9 139,617 - +0.6 139,634 + +1.6
Or see this region's nucleotide sequence