Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF757

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF756 and GFF757 are separated by 96 nucleotidesGFF757 and GFF758 are separated by 345 nucleotides GFF756 - Ribosomal protein S6 glutaminyl transferase, at 113,625 to 114,527 GFF756 GFF757 - putative sensory transduction regulator, at 114,624 to 115,100 GFF757 GFF758 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 115,446 to 116,561 GFF758 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1at 113.717 kb on - strand, within GFF756at 113.717 kb on - strand, within GFF756at 113.737 kb on - strand, within GFF756at 113.739 kb on - strand, within GFF756at 113.748 kb on - strand, within GFF756at 113.772 kb on + strand, within GFF756at 113.832 kb on - strand, within GFF756at 113.839 kb on - strand, within GFF756at 113.839 kb on - strand, within GFF756at 113.907 kb on - strand, within GFF756at 114.015 kb on - strand, within GFF756at 114.159 kb on + strand, within GFF756at 114.159 kb on + strand, within GFF756at 114.160 kb on - strand, within GFF756at 114.173 kb on + strand, within GFF756at 114.613 kb on - strandat 114.623 kb on + strandat 114.653 kb on + strandat 114.654 kb on - strandat 114.753 kb on + strand, within GFF757at 114.937 kb on + strand, within GFF757at 115.098 kb on + strandat 115.296 kb on + strandat 115.375 kb on - strandat 115.551 kb on + strandat 115.551 kb on + strandat 115.566 kb on + strand, within GFF758at 115.567 kb on - strand, within GFF758at 115.614 kb on - strand, within GFF758at 115.623 kb on + strand, within GFF758at 115.624 kb on - strand, within GFF758at 115.624 kb on - strand, within GFF758at 115.664 kb on - strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.846 kb on - strand, within GFF758at 115.847 kb on + strand, within GFF758at 115.848 kb on - strand, within GFF758at 115.874 kb on + strand, within GFF758at 115.875 kb on - strand, within GFF758at 116.099 kb on - strand, within GFF758

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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113,717 - GFF756 0.10 +0.6
113,717 - GFF756 0.10 +0.9
113,737 - GFF756 0.12 -1.3
113,739 - GFF756 0.13 -0.2
113,748 - GFF756 0.14 +0.4
113,772 + GFF756 0.16 -0.2
113,832 - GFF756 0.23 +0.2
113,839 - GFF756 0.24 +0.1
113,839 - GFF756 0.24 +0.7
113,907 - GFF756 0.31 -0.5
114,015 - GFF756 0.43 -0.3
114,159 + GFF756 0.59 +0.4
114,159 + GFF756 0.59 +0.4
114,160 - GFF756 0.59 +0.6
114,173 + GFF756 0.61 -0.7
114,613 - -0.9
114,623 + +0.1
114,653 + +0.2
114,654 - -0.3
114,753 + GFF757 0.27 -1.4
114,937 + GFF757 0.66 -0.4
115,098 + +0.5
115,296 + -0.2
115,375 - +0.1
115,551 + +0.4
115,551 + -0.8
115,566 + GFF758 0.11 -0.2
115,567 - GFF758 0.11 +0.6
115,614 - GFF758 0.15 -0.2
115,623 + GFF758 0.16 +0.3
115,624 - GFF758 0.16 -2.8
115,624 - GFF758 0.16 -0.2
115,664 - GFF758 0.20 -0.1
115,833 + GFF758 0.35 +0.7
115,833 + GFF758 0.35 -0.1
115,833 + GFF758 0.35 -2.5
115,846 - GFF758 0.36 -1.0
115,847 + GFF758 0.36 +0.2
115,848 - GFF758 0.36 +1.1
115,874 + GFF758 0.38 +0.2
115,875 - GFF758 0.38 +0.2
116,099 - GFF758 0.59 -0.2

Or see this region's nucleotide sequence