Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF745

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF744 and GFF745 are separated by 44 nucleotidesGFF745 and GFF746 are separated by 71 nucleotidesGFF746 and GFF747 are separated by 312 nucleotides GFF744 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 102,693 to 103,763 GFF744 GFF745 - Deoxyribose operon repressor, DeoR family, at 103,808 to 104,566 GFF745 GFF746 - Putative permease, at 104,638 to 105,246 GFF746 GFF747 - Multidrug translocase MdfA, at 105,559 to 106,791 GFF747 Position (kb) 103 104 105Strain fitness (log2 ratio) -2 -1 0 1at 102.935 kb on + strand, within GFF744at 103.032 kb on + strand, within GFF744at 103.812 kb on + strandat 103.823 kb on - strandat 103.880 kb on - strandat 103.899 kb on - strand, within GFF745at 103.923 kb on - strand, within GFF745at 103.923 kb on - strand, within GFF745at 104.021 kb on - strand, within GFF745at 104.192 kb on - strand, within GFF745at 104.195 kb on - strand, within GFF745at 104.231 kb on - strand, within GFF745at 104.542 kb on + strandat 104.566 kb on + strandat 104.583 kb on + strandat 104.617 kb on + strandat 104.617 kb on + strandat 104.618 kb on - strandat 104.788 kb on - strand, within GFF746at 104.803 kb on + strand, within GFF746at 104.804 kb on - strand, within GFF746at 105.312 kb on + strandat 105.343 kb on - strandat 105.388 kb on + strandat 105.393 kb on + strandat 105.430 kb on + strandat 105.431 kb on - strandat 105.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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102,935 + GFF744 0.23 +0.6
103,032 + GFF744 0.32 -0.1
103,812 + +0.7
103,823 - -0.0
103,880 - -0.6
103,899 - GFF745 0.12 -0.7
103,923 - GFF745 0.15 -0.2
103,923 - GFF745 0.15 -0.0
104,021 - GFF745 0.28 -2.0
104,192 - GFF745 0.51 +0.1
104,195 - GFF745 0.51 -1.3
104,231 - GFF745 0.56 -0.7
104,542 + -1.5
104,566 + +0.2
104,583 + +0.9
104,617 + -0.1
104,617 + -0.5
104,618 - +0.3
104,788 - GFF746 0.25 -0.2
104,803 + GFF746 0.27 -0.4
104,804 - GFF746 0.27 +0.2
105,312 + -0.3
105,343 - -0.9
105,388 + -0.4
105,393 + -0.2
105,430 + +1.4
105,431 - +0.3
105,558 + +0.1

Or see this region's nucleotide sequence