Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF667

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF666 and GFF667 overlap by 1 nucleotidesGFF667 and GFF668 are separated by 1 nucleotides GFF666 - Urocanate hydratase (EC 4.2.1.49), at 22,033 to 23,178 GFF666 GFF667 - Urocanate hydratase (EC 4.2.1.49), at 23,178 to 23,717 GFF667 GFF668 - Histidine ammonia-lyase (EC 4.3.1.3), at 23,719 to 25,239 GFF668 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.184 kb on - strand, within GFF666at 22.415 kb on - strand, within GFF666at 22.445 kb on - strand, within GFF666at 22.446 kb on + strand, within GFF666at 22.477 kb on + strand, within GFF666at 22.477 kb on + strand, within GFF666at 22.511 kb on - strand, within GFF666at 22.653 kb on + strand, within GFF666at 22.708 kb on - strand, within GFF666at 22.841 kb on - strand, within GFF666at 22.848 kb on + strand, within GFF666at 22.849 kb on - strand, within GFF666at 22.853 kb on - strand, within GFF666at 22.996 kb on - strand, within GFF666at 23.073 kb on + strandat 23.073 kb on + strandat 23.144 kb on + strandat 23.144 kb on + strandat 23.177 kb on - strandat 23.177 kb on - strandat 23.189 kb on + strandat 23.267 kb on - strand, within GFF667at 23.594 kb on - strand, within GFF667at 23.719 kb on - strandat 23.751 kb on - strandat 23.751 kb on - strandat 23.772 kb on + strandat 24.363 kb on - strand, within GFF668at 24.544 kb on - strand, within GFF668at 24.585 kb on - strand, within GFF668

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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22,184 - GFF666 0.13 +0.1
22,415 - GFF666 0.33 -0.1
22,445 - GFF666 0.36 +1.0
22,446 + GFF666 0.36 +0.2
22,477 + GFF666 0.39 -1.0
22,477 + GFF666 0.39 -0.9
22,511 - GFF666 0.42 -0.1
22,653 + GFF666 0.54 -0.3
22,708 - GFF666 0.59 -2.0
22,841 - GFF666 0.71 -0.5
22,848 + GFF666 0.71 +0.1
22,849 - GFF666 0.71 -0.2
22,853 - GFF666 0.72 -0.9
22,996 - GFF666 0.84 -0.3
23,073 + +0.0
23,073 + -0.3
23,144 + -0.1
23,144 + -0.8
23,177 - -0.4
23,177 - -0.2
23,189 + -0.1
23,267 - GFF667 0.16 -1.1
23,594 - GFF667 0.77 -0.4
23,719 - +0.3
23,751 - +0.1
23,751 - +0.3
23,772 + +0.4
24,363 - GFF668 0.42 -0.9
24,544 - GFF668 0.54 +0.3
24,585 - GFF668 0.57 +0.3

Or see this region's nucleotide sequence