Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF513

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF512 and GFF513 are separated by 46 nucleotidesGFF513 and GFF514 are separated by 12 nucleotidesGFF514 and GFF515 overlap by 40 nucleotides GFF512 - L-asparaginase (EC 3.5.1.1), at 242,043 to 243,086 GFF512 GFF513 - Glutathione reductase (EC 1.8.1.7), at 243,133 to 244,485 GFF513 GFF514 - hypothetical protein, at 244,498 to 244,629 GFF514 GFF515 - Protein involved in catabolism of external DNA, at 244,590 to 245,432 GFF515 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1at 242.169 kb on - strand, within GFF512at 242.376 kb on - strand, within GFF512at 242.410 kb on - strand, within GFF512at 242.418 kb on - strand, within GFF512at 242.609 kb on + strand, within GFF512at 242.653 kb on - strand, within GFF512at 242.734 kb on + strand, within GFF512at 242.739 kb on - strand, within GFF512at 242.739 kb on - strand, within GFF512at 242.798 kb on + strand, within GFF512at 242.798 kb on + strand, within GFF512at 242.802 kb on + strand, within GFF512at 242.802 kb on + strand, within GFF512at 242.802 kb on + strand, within GFF512at 242.802 kb on + strand, within GFF512at 242.803 kb on - strand, within GFF512at 242.838 kb on - strand, within GFF512at 242.915 kb on + strand, within GFF512at 242.954 kb on - strand, within GFF512at 242.964 kb on - strand, within GFF512at 243.078 kb on - strandat 243.081 kb on + strandat 243.085 kb on - strandat 243.132 kb on - strandat 243.134 kb on + strandat 243.349 kb on - strand, within GFF513at 243.350 kb on + strand, within GFF513at 243.350 kb on + strand, within GFF513at 243.350 kb on + strand, within GFF513at 243.350 kb on + strand, within GFF513at 243.351 kb on - strand, within GFF513at 243.354 kb on + strand, within GFF513at 243.373 kb on - strand, within GFF513at 243.373 kb on - strand, within GFF513at 243.480 kb on - strand, within GFF513at 243.507 kb on + strand, within GFF513at 243.557 kb on - strand, within GFF513at 243.563 kb on - strand, within GFF513at 243.635 kb on + strand, within GFF513at 243.675 kb on + strand, within GFF513at 243.675 kb on + strand, within GFF513at 243.678 kb on + strand, within GFF513at 243.956 kb on + strand, within GFF513at 243.998 kb on - strand, within GFF513at 244.028 kb on + strand, within GFF513at 244.191 kb on - strand, within GFF513at 244.198 kb on - strand, within GFF513at 244.214 kb on + strand, within GFF513at 244.214 kb on + strand, within GFF513at 244.215 kb on - strand, within GFF513at 244.289 kb on + strand, within GFF513at 244.409 kb on + strandat 244.409 kb on + strandat 244.410 kb on - strandat 244.414 kb on - strandat 244.466 kb on + strandat 244.466 kb on + strandat 244.466 kb on + strandat 244.467 kb on - strandat 244.467 kb on - strandat 244.467 kb on - strandat 244.467 kb on - strandat 244.467 kb on - strandat 244.467 kb on - strandat 244.473 kb on - strandat 244.498 kb on - strandat 244.518 kb on - strand, within GFF514at 244.554 kb on - strand, within GFF514at 244.554 kb on - strand, within GFF514at 244.715 kb on + strand, within GFF515at 244.821 kb on - strand, within GFF515at 244.858 kb on + strand, within GFF515at 244.880 kb on + strand, within GFF515at 244.882 kb on + strand, within GFF515at 245.192 kb on - strand, within GFF515at 245.232 kb on - strand, within GFF515at 245.252 kb on - strand, within GFF515at 245.262 kb on - strand, within GFF515at 245.381 kb on + strandat 245.382 kb on - strandat 245.442 kb on + strandat 245.455 kb on - strandat 245.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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242,169 - GFF512 0.12 -0.5
242,376 - GFF512 0.32 +0.4
242,410 - GFF512 0.35 +0.8
242,418 - GFF512 0.36 -0.3
242,609 + GFF512 0.54 +0.3
242,653 - GFF512 0.58 +0.7
242,734 + GFF512 0.66 +0.1
242,739 - GFF512 0.67 +1.0
242,739 - GFF512 0.67 +0.0
242,798 + GFF512 0.72 -1.4
242,798 + GFF512 0.72 -0.4
242,802 + GFF512 0.73 +0.8
242,802 + GFF512 0.73 -0.5
242,802 + GFF512 0.73 -0.1
242,802 + GFF512 0.73 -0.2
242,803 - GFF512 0.73 +0.5
242,838 - GFF512 0.76 +0.4
242,915 + GFF512 0.84 +0.6
242,954 - GFF512 0.87 +0.1
242,964 - GFF512 0.88 -0.2
243,078 - -0.2
243,081 + +0.3
243,085 - +0.1
243,132 - -0.3
243,134 + -0.8
243,349 - GFF513 0.16 -0.8
243,350 + GFF513 0.16 -1.0
243,350 + GFF513 0.16 -1.0
243,350 + GFF513 0.16 -2.0
243,350 + GFF513 0.16 +0.1
243,351 - GFF513 0.16 -0.7
243,354 + GFF513 0.16 -0.1
243,373 - GFF513 0.18 -0.3
243,373 - GFF513 0.18 -0.7
243,480 - GFF513 0.26 -0.3
243,507 + GFF513 0.28 -0.3
243,557 - GFF513 0.31 -0.2
243,563 - GFF513 0.32 -0.3
243,635 + GFF513 0.37 +0.4
243,675 + GFF513 0.40 -1.5
243,675 + GFF513 0.40 -1.5
243,678 + GFF513 0.40 -0.5
243,956 + GFF513 0.61 +0.1
243,998 - GFF513 0.64 -0.7
244,028 + GFF513 0.66 -0.6
244,191 - GFF513 0.78 -0.9
244,198 - GFF513 0.79 -1.2
244,214 + GFF513 0.80 +0.3
244,214 + GFF513 0.80 -0.4
244,215 - GFF513 0.80 -0.7
244,289 + GFF513 0.85 -1.9
244,409 + -0.6
244,409 + -0.2
244,410 - +0.2
244,414 - -0.3
244,466 + -0.4
244,466 + -0.4
244,466 + -0.4
244,467 - +0.1
244,467 - -0.0
244,467 - +0.2
244,467 - -0.6
244,467 - -0.4
244,467 - +0.8
244,473 - -0.9
244,498 - -0.6
244,518 - GFF514 0.15 +0.3
244,554 - GFF514 0.42 +0.6
244,554 - GFF514 0.42 -0.2
244,715 + GFF515 0.15 +0.3
244,821 - GFF515 0.27 -0.2
244,858 + GFF515 0.32 -0.5
244,880 + GFF515 0.34 -0.0
244,882 + GFF515 0.35 +0.4
245,192 - GFF515 0.71 +0.1
245,232 - GFF515 0.76 +1.2
245,252 - GFF515 0.79 -0.1
245,262 - GFF515 0.80 +0.3
245,381 + +0.9
245,382 - -1.9
245,442 + -0.2
245,455 - -0.2
245,471 - +0.2

Or see this region's nucleotide sequence