Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4522

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4521 and GFF4522 are separated by 82 nucleotidesGFF4522 and GFF4523 are separated by 234 nucleotides GFF4521 - Uncharacterized zinc-type alcohol dehydrogenase-like protein ybdR, at 308,237 to 309,475 GFF4521 GFF4522 - Regulator of nucleoside diphosphate kinase, at 309,558 to 309,968 GFF4522 GFF4523 - Ribonuclease I precursor (EC 3.1.27.6), at 310,203 to 311,009 GFF4523 Position (kb) 309 310Strain fitness (log2 ratio) -1 0 1at 308.663 kb on + strand, within GFF4521at 308.698 kb on + strand, within GFF4521at 308.699 kb on - strand, within GFF4521at 308.725 kb on + strand, within GFF4521at 309.080 kb on - strand, within GFF4521at 309.317 kb on + strand, within GFF4521at 309.317 kb on + strand, within GFF4521at 309.318 kb on - strand, within GFF4521at 309.318 kb on - strand, within GFF4521at 309.319 kb on + strand, within GFF4521at 309.319 kb on + strand, within GFF4521at 309.319 kb on + strand, within GFF4521at 309.320 kb on - strand, within GFF4521at 309.546 kb on - strandat 309.896 kb on - strand, within GFF4522at 309.924 kb on - strand, within GFF4522at 309.951 kb on - strandat 309.989 kb on + strandat 310.510 kb on + strand, within GFF4523at 310.900 kb on + strand, within GFF4523

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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308,663 + GFF4521 0.34 +0.8
308,698 + GFF4521 0.37 +0.2
308,699 - GFF4521 0.37 +0.3
308,725 + GFF4521 0.39 -0.1
309,080 - GFF4521 0.68 +1.5
309,317 + GFF4521 0.87 +0.6
309,317 + GFF4521 0.87 +0.3
309,318 - GFF4521 0.87 +0.0
309,318 - GFF4521 0.87 -0.9
309,319 + GFF4521 0.87 +1.1
309,319 + GFF4521 0.87 +0.6
309,319 + GFF4521 0.87 +0.1
309,320 - GFF4521 0.87 -1.1
309,546 - +0.0
309,896 - GFF4522 0.82 -0.2
309,924 - GFF4522 0.89 -1.0
309,951 - +0.1
309,989 + +1.3
310,510 + GFF4523 0.38 +0.2
310,900 + GFF4523 0.86 +0.2

Or see this region's nucleotide sequence