Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4420 and GFF4421 are separated by 226 nucleotides GFF4421 and GFF4422 are separated by 78 nucleotides GFF4422 and GFF4423 are separated by 84 nucleotides
GFF4420 - DNA-binding transcriptional activator of the allD operon, at 205,064 to 205,990
GFF4420
GFF4421 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 206,217 to 206,699
GFF4421
GFF4422 - Negative regulator of allantoin and glyoxylate utilization operons, at 206,778 to 207,596
GFF4422
GFF4423 - Glyoxylate carboligase (EC 4.1.1.47), at 207,681 to 209,462
GFF4423
Position (kb) 206
207 Strain fitness (log2 ratio) -1
0
1 at 205.331 kb on - strand, within GFF4420 at 205.455 kb on - strand, within GFF4420 at 205.490 kb on + strand, within GFF4420 at 205.500 kb on - strand, within GFF4420 at 205.513 kb on + strand, within GFF4420 at 205.519 kb on + strand, within GFF4420 at 205.519 kb on + strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.520 kb on - strand, within GFF4420 at 205.655 kb on + strand, within GFF4420 at 205.682 kb on - strand, within GFF4420 at 205.683 kb on + strand, within GFF4420 at 205.684 kb on - strand, within GFF4420 at 205.910 kb on - strand at 205.960 kb on + strand at 206.057 kb on - strand at 206.231 kb on - strand at 206.382 kb on - strand, within GFF4421 at 206.385 kb on - strand, within GFF4421 at 206.385 kb on - strand, within GFF4421 at 206.419 kb on + strand, within GFF4421 at 206.420 kb on - strand, within GFF4421 at 206.443 kb on + strand, within GFF4421 at 206.720 kb on - strand at 206.731 kb on - strand at 206.731 kb on - strand at 206.774 kb on - strand at 206.777 kb on + strand at 206.789 kb on - strand at 206.875 kb on - strand, within GFF4422 at 207.036 kb on - strand, within GFF4422 at 207.036 kb on - strand, within GFF4422 at 207.036 kb on - strand, within GFF4422 at 207.053 kb on + strand, within GFF4422 at 207.060 kb on - strand, within GFF4422 at 207.092 kb on + strand, within GFF4422 at 207.104 kb on + strand, within GFF4422 at 207.105 kb on - strand, within GFF4422 at 207.229 kb on + strand, within GFF4422 at 207.229 kb on + strand, within GFF4422 at 207.347 kb on + strand, within GFF4422 at 207.444 kb on + strand, within GFF4422 at 207.444 kb on + strand, within GFF4422 at 207.444 kb on + strand, within GFF4422 at 207.445 kb on - strand, within GFF4422 at 207.445 kb on - strand, within GFF4422
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 205,331 - GFF4420 0.29 +0.2 205,455 - GFF4420 0.42 -0.5 205,490 + GFF4420 0.46 +0.6 205,500 - GFF4420 0.47 +0.3 205,513 + GFF4420 0.48 +0.3 205,519 + GFF4420 0.49 -0.1 205,519 + GFF4420 0.49 +0.2 205,520 - GFF4420 0.49 +0.3 205,520 - GFF4420 0.49 +0.1 205,520 - GFF4420 0.49 +0.1 205,520 - GFF4420 0.49 +0.8 205,655 + GFF4420 0.64 +1.3 205,682 - GFF4420 0.67 +0.0 205,683 + GFF4420 0.67 -0.4 205,684 - GFF4420 0.67 -0.1 205,910 - -0.5 205,960 + +0.1 206,057 - -0.5 206,231 - -0.7 206,382 - GFF4421 0.34 -1.1 206,385 - GFF4421 0.35 -0.3 206,385 - GFF4421 0.35 -0.4 206,419 + GFF4421 0.42 -0.2 206,420 - GFF4421 0.42 -0.5 206,443 + GFF4421 0.47 -0.5 206,720 - -0.7 206,731 - -1.3 206,731 - -0.4 206,774 - -0.9 206,777 + -0.6 206,789 - -0.1 206,875 - GFF4422 0.12 +0.4 207,036 - GFF4422 0.32 -0.1 207,036 - GFF4422 0.32 -0.3 207,036 - GFF4422 0.32 -0.0 207,053 + GFF4422 0.34 -0.2 207,060 - GFF4422 0.34 -0.5 207,092 + GFF4422 0.38 -0.2 207,104 + GFF4422 0.40 -0.4 207,105 - GFF4422 0.40 +0.1 207,229 + GFF4422 0.55 -0.3 207,229 + GFF4422 0.55 +0.4 207,347 + GFF4422 0.69 +0.4 207,444 + GFF4422 0.81 -0.2 207,444 + GFF4422 0.81 -0.1 207,444 + GFF4422 0.81 +0.6 207,445 - GFF4422 0.81 +0.1 207,445 - GFF4422 0.81 -0.2
Or see this region's nucleotide sequence